Osmerus eperlanus (European smelt): 134039946
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Entry
134039946 CDS
T10927
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03040
Spliceosome
Brite
Enzymes [BR:
oep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
134039946 (ddx42)
Spliceosome [BR:
oep03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
134039946 (ddx42)
Complex B
134039946 (ddx42)
Complex C
U2 SnRNP specific factors
134039946 (ddx42)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
134039946
NCBI-ProteinID:
XP_062342143
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Position
2
AA seq
929 aa
AA seq
DB search
MNWSKGGPSGKRGFGFGGFSLGGGGGGGGGGGPAKKEEPRLPQKSHTSFGATASAAGYGK
NQQLPAFYKIGTKRANFDEENAYFEDDEEESSSTDLPYIPAENSPTRQQLPSGGGSDSED
DPLDAFMAEVEDQAAKDMRKLEEKEKEKEKKTAKGIRDDIEEEDEQEAYFRYMAENPTAG
LTLEDEDENVDYDSDGNPIAPTTKKIIMPLPPIDHSEIDYPPFEKNFYNEHEELHSLTPT
QVIELRHKLNLRVSGAAPPKPSTSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALGG
RDMIGIAKTGSGKTAAFIWPMLVHIMDQKELDTGEGPIAIIVCPTRELCQQIHAECKRFG
KAYSLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEAD
RMFDMGFEYQVRSVASHVRPDRQTLLFSATFRKKIERLARDILVDPIRVVQGDIGEANED
VTQLVEVLPSGVEKWGWLTRRLVEFTSSGSVLIFVTKKANCDELATNLTQEGHSLGLLHG
DMDQSERNKVIADFKKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTG
RAGEKGVAHTLLTNKDTSFAGDLVRNLEGANQCVSKELMDLAMQNPWFRKSRFKGGKGKK
VNIGGGGLGYRERPGLGAESSDRSGGSSSSSYEGYSKPTTGAMGDRMSAMKQAFQSQYKN
HFVAASGVPPKLTTKSSSSSGWTSAGSLSSVPTEAAEAPDRFRASMAPPPALSMGTKMAG
FTSAGSLSSVPESHNSAPQSYPAPPSPRDGPRDRYGEDRGRHGEGHHRYSDRSERHVGGE
RDRHGDRHAERDRYGDAERHGSSGRHGDSRNGDGNRRERDDWRSDREGGDREGGDREGGD
RGGEGRGNREEDSFAVPDPPKRKKSRWDN
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgaattggagcaagggtgggccgagtggtaagcgtggattcgggtttggaggattctca
cttggaggaggaggaggagggggtggtggaggaggaccagcaaagaaggaagagcctcgt
ttgccccaaaagtcccacacatcgtttggagcgactgcatcagcagcaggctatggaaag
aaccagcagctcccagcattctacaaaataggaacaaaaagagcaaactttgacgaagag
aatgcgtatttcgaagatgatgaagaggagtccagcagtacagacttgccctacatccca
gctgagaactcacccacacgccagcagctcccgtcagggggcggttcagacagtgaagat
gaccccttggacgccttcatggcggaagttgaggaccaagcggctaaggacatgaggaaa
ctggaagagaaggagaaggagaaggagaagaaaactgcaaagggtattcgtgatgacatt
gaagaggaagatgaacaagaagcctacttcaggtacatggcggagaaccccacagctggg
ctgaccctggaggacgaggacgagaacgtggattatgatagcgatgggaaccccattgca
cctactaccaaaaagatcatcatgcccttgccccccattgaccactcagagatcgattat
cctccctttgagaagaacttctacaacgagcatgaggaacttcacagcctaacacctacc
caggtcatagagttgaggcacaaactaaatttgcgggtgtcaggtgctgcccctcctaaa
ccctccaccagctttgcccattttggctttgacgagcaactaatgcaccagatccgcaag
tctgagtacacacaaccaacccctatccagtgccagggagtgccaatagccctgggtggt
cgtgacatgatcggtatcgccaagaccggcagcgggaaaacggcagcgtttatctggccc
atgctagtccacatcatggaccagaaagagctggacaccggagaagggcccatcgcaatc
atagtgtgccccaccagggaactctgtcagcagatccatgcagagtgcaagcgcttcggt
aaagcctactctctgcgctctgtggcggtctatggaggaggcagcatgtgggaacaagcc
aaagcgctgcaggagggggcggagattgtggtgtgcaccccgggccgtctgattgaccat
gtgaagaagaaggccacgtctctgcagagagtcacatacctggtgtttgacgaggcggat
cgcatgtttgacatgggcttcgaataccaagtgaggtccgtcgccagtcatgtccgccct
gacagacagacccttctgttcagcgctaccttccgtaaaaagatcgagaggctagcccga
gacatcctggtggaccccatccgggtggtgcagggagacatcggagaggccaacgaggat
gtgacccagctggtggaagtgctgcccagcggggtggagaagtggggctggctcacccgc
cgcctggtggagttcacctcctccggctcagtgctcatctttgtcaccaagaaggccaac
tgtgacgagctggccaccaacctgacccaggagggccacagcctggggctgctgcacgga
gacatggaccagagcgagaggaacaaggtgatcgccgacttcaagaagaagaacctgccc
gtgctggtggccactgacgttgcagctcgtggtctggacatcccttcaatccgcaccgtc
gtgaattacgatgtggcccgagacatcgacacacacactcacaggattggccgaacaggt
cgtgcgggtgaaaagggtgtggcccacaccctcctgaccaataaagacacgtcttttgct
ggtgaccttgtgcggaacctggagggagccaatcaatgtgtatccaaagagctcatggac
ttagcaatgcagaatccctggttcaggaaatcccgcttcaagggtggtaaaggaaagaag
gtgaacataggaggtggtggtcttggttacagggagaggccaggccttggagctgaaagt
tctgatcgtagtggagggtcttcttcaagtagctatgaaggttacagtaaacccactact
ggggccatgggagacagaatgtcagccatgaagcaagccttccagtcacagtacaagaac
cactttgtagcagcgtcaggcgttccgcctaagctcaccaccaagtctagcagctcctca
ggctggaccagtgccggcagtctcagctccgtgcccacagaggctgccgaggccccagac
aggttcagggcctccatggcccctcctccagccctcagtatgggcaccaagatggccgga
ttcaccagtgctggttccctcagctctgtgccagagagccacaatagcgcacctcagagc
taccctgccccgccctccccgagggacgggccccgcgacaggtatggggaagacaggggt
cgccacggagaggggcaccaccggtacagcgacaggagcgagcgccacgtaggcggagaa
cgggaccgtcacggggaccggcacgccgaacgcgaccgatacggggacgcggagcgccac
ggcagcagtggtcgccacggtgacagtcgtaatggagatggaaacaggagagagagagat
gattggagaagtgacagggaggggggagaccgggaggggggagacagggaggggggagac
aggggaggtgaggggagagggaacagggaggaagacagctttgccgtcccagatccgccc
aaacgtaaaaaaagcaggtgggacaactaa
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