Osmerus eperlanus (European smelt): 134040133
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Entry
134040133 CDS
T10927
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03015
mRNA surveillance pathway
Brite
Transcription machinery [BR:
oep03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
134040133 (pcf11)
Messenger RNA biogenesis [BR:
oep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
134040133 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
134040133
NCBI-ProteinID:
XP_062342359
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All DBs
Position
19:complement(13703963..13713123)
Genome browser
AA seq
1625 aa
AA seq
DB search
MDCLVINCYVNENAGLVFDRTHTAKMDDDAAREDACGEYQSSLEDLTFNSKPHINMLTIL
AEENLHFAKDIVAIIEAQINKAPPAEKLPVLYLVDSIVKNVGGEYLAVFAKNLVSSFICV
FEKVDENTRKSLFKLRSTWDEIFPLNKLYALDVRVNSHDPAWPIKPLAANIHVNPRFIKP
TEEAASPVPAPSPPAAPTPAPVPPPSEASITQEQLIRQQLLAKQKQLLELQHKKIELELE
QTKAQLAANVVLTQPTAVTTPAHSIAVPKAPQTAPKQWVPPQAESKPPTRDPRLNRSGPP
TPQPKEQPNSKRDAHNMGAPAHTPEKKAPEKFSRPEKARQPRKEMEEKPKSKSPSPLAKG
VMAKSKHSESESVKSADAGKKDPRLRKHVHEKGEAKEEEVVKEKKRCTEKKEKEDPGKAP
ELQKAARGKLVNGSISKHDRVETPESKSESKTGGNARTNARKRTRSRSRSRSPAPPSPKR
KDRRSPKTRTRSSSASPPPPPHKPSKARMSGGKHCHVEDSTQHGKGRDERATPKKGPSEP
RRGKRSAEERHMEARDSLLSRVPHDSKDSKDNSHRWKSGWEENKHLKLSEEAHGKAGPQR
HKSFSGGQRPSTPRTPKPHRLSVDANLQIPEALNSASKRDLLRKASRRLENGEISNEDFL
NVAHQIKQLFQYQEEKQRSDSWEGSGEDGPHFPNKKKPLLSTPGSAPQDSLSDAELSYFE
HKSRLRRTQLPQRQGGEDWEGGEEGQEEVDSAAPPGGKAEGSRGAVHPSVPPFPRQPRER
HGKEPPEEQQPPAAMMEGSYNHGREFPRIKSLQGLRFRRRADPRESAGPDRLKNEREWTS
PLSERQREEQKSGYDAPRRYTGTPDPRRDDPPKHDRAPPKASLVHRGSVSPALPEGPTRK
PPVGYERERLSPLEQLDPAGLSPVPRFESPNSEHSDDGPLEAPRSILKPPSRGPLPRHTH
SPGHTPPHVSEGGSAAPQRYDGPPKGHPSRYDGPGRPPHLPGRYEGGPGPGRYDGPGGSH
GRYDNLHPHAHGRFDGPGRFDGPPMPHGPMRGGDPQGRYDGPLASQGRGRYDGPLGPQPA
RFESPGPRPGRFDGPMQPKRFDGPGRFDSPHMQPGRFEGPVGFQTPMHFDGPSNQPGSMH
FDGPSNQPGSMHFDGPGNQPGPVCFDAPGQQGPMRFDMPHFDGPSGHQGPRFCGPPGMQP
PLRPGAPVYEPMANAAGGQQPSGFNMANQHFPEPHNPAFGSGQHGFSGQPGGPQAGAFNV
PSSSGFPNSFVQPGPSFYGPGAPGGGMNAPSQTGNMQPPMNMLPNLGQPPFLPQNPVPFN
QPGPQFPESHFGQVDVNDLLTKLISTGIIKPAQTETAPSGTESAALPPAPPVVVEEEEEE
EQEEDENLPDLTGFTIEDMKLRYDSVVTKLYTGIQCYSCGMRFTSSQTDVYADHLDWHYR
LNRSEKDVSKKVTHRRWYYSLTDWIEFEEIADLEERAKSLFFEKVNEEVVQKTQEAAKEK
EVQSVRAAADVVDESCEICQEQFEMYWEEEEEEWHLRDAIRVDEKTYHPSCFEDYKNTSS
FPDASPSPTKLLTDHPLSAFVKEEEPQAPSCALVVKQEAELEAGVAPKEEEVQVKVEAGT
EMAAS
NT seq
4878 nt
NT seq
+upstream
nt +downstream
nt
atggactgcctggtaataaattgttatgttaacgaaaacgctggtttagtatttgaccga
acacacaccgcaaagatggatgacgacgcggcgagggaagatgcctgcggagagtatcaa
tcctccctcgaagatttgacattcaacagtaaacctcacatcaatatgctgaccattctg
gcagaggagaatctgcacttcgccaaggatatcgtcgcaataattgaagcacaaatcaat
aaggccccacctgccgagaagcttcctgttttgtacttagtggattccatagtgaagaat
gtcggaggcgaataccttgcagtgtttgctaaaaacctagtctcttcatttatatgtgtt
tttgaaaaggtggatgaaaacactaggaaaagtctgttcaaattgcgctccacttgggat
gagatatttcctctaaacaaactctatgctttggacgtacgggtgaattctcatgacccg
gcctggcctatcaaaccactggcggccaacattcacgtgaatcctaggttcataaaaccg
accgaggaggccgcctcgcctgtgcctgccccctccccccctgctgcacccaccccggcc
cccgtgcccccccccagcgaggcgagcatcacccaggagcagctcattagacagcagctg
ctggccaagcagaaacaactcctggagctgcagcacaagaagattgaactggagctggaa
cagaccaaagcacagctggctgcaaatgtagtgttgacgcagccaacagcagttacgact
ccagcccacagtattgcagtgccaaaggcaccccagaccgctcctaagcagtgggtcccc
cctcaggctgagagcaaaccacccacaagagacccacgtctgaaccgctctggccccccc
accccgcagcccaaagagcagcctaacagcaagcgggacgcccacaacatgggagcacca
gcccacacacctgagaagaaggctccagagaagtttagcaggccggagaaagcgagacag
cccaggaaggagatggaggagaagccaaagtccaagtcgccgtctcccttggctaaaggg
gtgatggctaaaagcaagcattcggagtctgagagcgtgaagtcggcagacgccggaaag
aaagaccccaggctgcggaaacacgtccacgagaagggtgaagctaaagaggaggaggtg
gtgaaggagaagaagagatgcactgagaagaaggagaaagaggatcccgggaaagctccg
gaacttcagaaagcagccagggggaagctggttaatggctcgatcagcaaacacgaccgc
gtcgagacccctgagagcaagtcggagagcaagactggagggaacgccaggaccaacgcc
cggaaacgcacacgctcccgttcccgctcacgttcccctgcccctccctcccccaagagg
aaggaccggaggtcacctaagaccaggaccaggagctcctccgcttctcctcctcctccg
cctcacaagccgagcaaggcccggatgtctggaggcaaacactgtcacgtggaggactcc
acccagcatgggaagggtcgagacgagagggccacacccaagaagggcccgtcggagccc
aggagagggaagcgctcggcggaggagaggcacatggaggccagggactcgctgctctcc
cgggttccccacgacagcaaagacagcaaggataactcccaccggtggaagagtggatgg
gaagagaacaaacatctgaagttgtcagaggaggctcatgggaaggctggccctcagaga
cacaagtctttctctggcggtcagcgacccagcacccctcgcacccccaagcctcaccgc
ctcagcgtggacgccaacctgcagataccagaggccctcaactctgccagcaagagagac
ctgctcaggaaggccagtaggcgtttagagaacggggagatctccaacgaggacttcctg
aacgtggcccaccagatcaagcagctgttccagtaccaggaggagaagcagcggtctgac
tcctgggagggctccggcgaggacggcccgcacttccccaacaagaagaagcccctgctc
tccacccccggctccgccccgcaggacagcctgtctgacgccgagctcagctacttcgaa
cacaagtcccgcctgagaaggacccagctgccccagcgccaggggggcgaggactgggag
ggtggggaggagggtcaggaggaggtggattccgccgcgccccctggggggaaggcagag
ggcagcaggggggccgtccacccctcggtccctccgttccccaggcagcccagggagagg
catgggaaggagccaccggaggagcagcaacccccggctgccatgatggagggatcgtat
aaccacggcagggagttccccaggatcaagtccctgcagggcctgcgcttcaggaggagg
gccgaccccagggagtccgctgggccagacaggctcaagaatgagagggagtggacctcc
cccctgagtgagcgtcagcgggaggagcagaagagcggctacgacgcgcccaggcgctac
accgggacgcccgacccccgccgcgacgacccccccaagcacgaccgggcccctcccaag
gccagcctggtccacaggggctccgtcagccccgccctgcccgagggccccaccaggaag
cccccggtggggtacgagagagagcgcctctcccccctggagcagctggacccggccggg
ctcagccccgtccccaggttcgagagtcccaacagtgagcactctgacgacgggcccctg
gaggcccccaggtccatcctcaaacccccctccagagggcccctcccccggcacacccac
tcccccggacacacccctccgcatgtctccgaagggggctcggctgccccgcagaggtac
gacggcccccccaaaggccacccctcccgctacgacggccccggaagaccgcctcacctc
ccaggtcggtacgagggcgggcccgggccaggccgctacgacgggccaggcggctcccac
ggtcgctacgacaaccttcacccccacgctcacggcaggttcgacgggcctgggaggttc
gacgggccccctatgccccacgggcccatgaggggaggggatccacagggtcgctacgac
ggccccctggcctcacagggccgtggccgctacgatgggcctctgggcccacagccagcc
aggttcgagagcccaggccccagaccggggcgcttcgacggcccaatgcagcccaaacgc
ttcgacgggccgggcaggtttgacagtccacacatgcagccaggcaggtttgagggaccc
gtagggttccagactcccatgcactttgacgggccttcgaaccagccaggttcgatgcac
tttgacgggccttcgaaccagccgggttcgatgcactttgacgggccagggaaccagcca
ggcccagtctgcttcgacgcgcccggccagcagggacccatgaggttcgacatgccccac
ttcgacgggccctcggggcaccagggcccccggttctgcgggccccccggcatgcagcct
cccctgcggccgggcgctcccgtctacgagcccatggccaacgcagcagggggccagcag
ccctccgggttcaacatggccaaccagcacttcccagagccccacaaccctgcgttcggc
agcgggcagcacggcttctcagggcagccgggcgggccccaggcgggggcgttcaacgtg
ccctcctcctcagggttccccaactccttcgtccaacccggtccttccttctacggcccc
ggggcccccgggggaggaatgaacgcgccgtcccagacaggaaacatgcaacctccgatg
aatatgctgccaaacctgggccagccgcccttcctaccacaaaacccagtgcctttcaac
caaccaggtcctcagtttccggagagccacttcggccaggtggatgtgaacgacttgctg
acgaaactcatctctaccggcatcatcaagcctgctcagacagagaccgctcccagtgga
accgagtcggctgccctgcccccggcgcctcccgtggtggtggaggaagaggaggaggag
gagcaggaggaggatgagaaccttccagacctcacaggcttcaccatagaggacatgaag
ctgcgctacgacagcgtggtgaccaaactctacaccggcatccagtgctactcctgcggc
atgcgcttcacctcttcgcagacagatgtctacgccgaccacctggactggcactaccgg
ctgaaccgctcggagaaggacgtcagcaagaaggtcacacaccgccgctggtactacagc
ctcacggactggattgagtttgaggagatcgccgatctggaggagcgggcgaagagcctg
ttctttgagaaggtcaacgaggaagtggtgcagaagacccaggaagcagcgaaggagaag
gaggtccagagcgtgagggcggcggccgacgtggtggacgagtcctgtgagatctgccag
gagcagtttgagatgtactgggaggaggaggaggaggagtggcacctgagggacgccatc
cgcgtcgacgagaagacatatcatccttcgtgttttgaagattacaagaatacgtcatca
tttccagacgcctctccgtctcccaccaagctgctgaccgaccacccgctgagcgccttt
gtgaaggaagaggaaccgcaggcgcccagctgtgcgctcgtcgtcaaacaggaagcggag
ctggaggcgggcgtggctccgaaggaagaggaggttcaggttaaggtggaggcaggaaca
gaaatggctgcttcctga
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integrated database retrieval system
