Osmerus eperlanus (European smelt): 134040619
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Entry
134040619 CDS
T10927
Symbol
pabpc1b
Name
(RefSeq) polyadenylate-binding protein 1b isoform X1
KO
K13126
polyadenylate-binding protein
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03015
mRNA surveillance pathway
oep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
134040619 (pabpc1b)
09123 Folding, sorting and degradation
03018 RNA degradation
134040619 (pabpc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oep03019
]
134040619 (pabpc1b)
03041 Spliceosome [BR:
oep03041
]
134040619 (pabpc1b)
Messenger RNA biogenesis [BR:
oep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
134040619 (pabpc1b)
mRNA cycle factors
Stress granule specific factors
134040619 (pabpc1b)
Spliceosome [BR:
oep03041
]
Complex C
Other components
Complex C specific factors
134040619 (pabpc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_10
RRM_5
RRM_7
RBD_RDR6
RRM_occluded
RRM_3
YflT
HTH_58
POP1_C
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
134040619
NCBI-ProteinID:
XP_062342588
LinkDB
All DBs
Position
20:3535581..3541345
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AA seq
633 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDEEKLRDVFSQYGNAMSIRVMTDDSGKSRGFGFVSFEH
HEDAQKAVDEMNGKEFNGKLIYVGRAQKKMERQTELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGLDDERLRKEFTPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQAQNRA
AYYPTGQMAQLRPSPRWATQGVRPQHFQNMPGAMRPNVPRPQTFGSMRPTSQVPRMMSAQ
RLPAQAMGPRPINAAAAASAPVRGVPQYKYAPGVRNPQQHMNPQPQVAMQQPAVHVQGQE
PLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPESL
RSKVDEAVAVLQAHQAKETAQKTVPNSAGVPSV
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgaacccgagtgctcctagttacccgatggcatctctgtatgttggggacctgcatcaa
gacgtgaccgaggccatgctgtacgagaagtttagccccgcaggggctatcttgtccatc
cgtgtatgcagagacatgatcactaggcgttcgcttggatacgcctatgtaaactttcag
cagccagcagacgctgagcgtgcgctagatacaatgaattttgacgtgatcaagggtcgc
ccggtccgtatcatgtggtcccagcgtgacccttccctgcgcaaaagtggcgtcggaaac
atcttcattaagaacttggataagtctattgacaataaggccctatacgacaccttctcc
gcctttggcaacatcctctcttgcaaggtggtgtgtgatgagaatggctcaaagggctac
ggctttgtgcactttgagactcaggaggcggcggagagggccattgagaaaatgaacggc
atgttgctcaatgaccgaaaagttttcgtcggtcgcttcaagtcccgcaaagagcgcgag
gctgagctgggcgcccgcgccaaggagttcacaaacgtctacatcaagaactttggggag
gatatggacgaggagaagctgagggacgtgttcagtcaatatggcaacgccatgagtatc
cgagtcatgacggatgacagtggaaagtcacgaggatttggcttcgtcagcttcgagcac
cacgaggatgcccagaaggccgtagacgagatgaacgggaaggagtttaacggcaagctg
atctacgtgggccgcgcccagaagaagatggagcgccagactgaactgaagcgcaagttt
gagcagatgaaacaggaccgcatgacgcgctaccagggggttaacctctacgtcaagaac
ctcgacgacggccttgatgatgagcgcctccgcaaggagttcacccccttcgggacgatc
accagcgccaaagtcatgatggagggcggccgcagcaaaggctttggctttgtgtgcttc
tcctccccggaggaggccaccaaggcggtgactgaaatgaacggccgcatcgtggccacc
aagcccctctacgtggcgctggcccagcgcaaggaagagcggcaagcacacctcaccaat
cagtacatgcagcggatggccagcgttcgcgccgtgcccaacccagtgataaacccctac
cagcctgctcctccctctgggtacttcatggctgccatcccccaggctcagaatcgggct
gcgtactatcctacaggccagatggctcagctgagacccagcccgcgctgggccacccaa
ggtgtccgtcctcagcacttccagaacatgcctggtgccatgcgtcccaacgtcccccgt
ccccagaccttcggctccatgagaccaacctcccaggtgccccgcatgatgtctgcccag
cgccttcctgcccaggccatgggacctcgtcccatcaacgcagcggcggctgcctctgcg
cccgtgcgtggcgtgccccagtacaagtatgccccgggagtccgcaatccccagcagcac
atgaacccccagcctcaggtggctatgcagcagcctgctgtccacgtccagggccaggag
cctctgactgcctctatgctcgctgctgccccaccacaggagcagaagcagatgctgggt
gagcgtttgttccctctgatccagaacatgcatcccagcctggccggtaagataacagga
atgcttctggagatcgacaactcggagcttctccacatgctggagtccccggaatctctg
cgctcaaaggttgatgaggcggtggctgtgctccaagcccaccaggccaaggagacagct
caaaagactgtgcccaactctgctggagtcccaagtgtttaa
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