Osmerus eperlanus (European smelt): 134040823
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Entry
134040823 CDS
T10927
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03013
Nucleocytoplasmic transport
oep03015
mRNA surveillance pathway
oep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134040823 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
134040823 (ddx39b)
03015 mRNA surveillance pathway
134040823 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oep03019
]
134040823 (ddx39b)
03041 Spliceosome [BR:
oep03041
]
134040823 (ddx39b)
Enzymes [BR:
oep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
134040823 (ddx39b)
Messenger RNA biogenesis [BR:
oep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
134040823 (ddx39b)
Spliceosome [BR:
oep03041
]
Complex C
Other components
EJC/TREX
134040823 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
134040823 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
134040823
NCBI-ProteinID:
XP_062342926
LinkDB
All DBs
Position
20:complement(9538466..9543889)
Genome browser
AA seq
433 aa
AA seq
DB search
MTEHDVENELLDYEEDDVDTAGGGGACSGVDGLSAKKEGVKGSYVSIHSSGFRDFLLKPE
LLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVS
VLVMCHTRELAFQISKEYERFSKYMTTIKVAVFFGGMPIKKDEEVLKRECPHVVVGTPGR
ILALIRNKSLILRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEI
RPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVK
SVQRCVALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIER
VNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEGDARTLNDVQDRFEVNISQLP
DEIDISSYIEPAR
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgactgagcacgacgtggagaatgagctcttagattacgaggaggatgatgtggacacg
gcagggggaggaggtgcatgcagtggagtagatggtttgtccgcaaaaaaagagggtgtg
aagggctcctatgtgtccattcactcttctgggttcagagactttctactaaagccagaa
ctgttgagggcgatagtggactgtggctttgaacacccttcagaggttcaacatgaatgc
atcccccaggccatcttgggcatggacgtgctgtgccaggctaagtctggcatgggcaag
acagcagtgtttgtgttggctactctgcagcagcttgagccagtcactggacaggtttca
gtcctggttatgtgccacaccagagaactggcctttcagatcagcaaggagtacgagaga
ttctcaaaatacatgaccaccatcaaggtggctgtgttttttggcggcatgcctatcaag
aaggatgaggaggtgttgaagagagagtgtcctcatgtggtcgtggggacgccagggcgt
atcttggccctgatacgcaacaagagcctcatcctacgtcatatcaaacactttatcctg
gacgaatgtgacaaaatgcttgaacagctagacatgcgtcgagacgtccaggaaatattc
cgcatgacccctcatgagaagcaggtcatgatgttcagtgccaccttgagcaaagagatc
cgtccagtctgccgaaaattcatgcaagatcctatggaaatatttgtggatgatgagacc
aagctgacgttgcacggcctgcagcagtactacgtcaagctgaaggacaacgagaagaac
aggaagctgtttgatctcctggatgtgctggagttcaaccaggtggtgatctttgtgaag
tcagtgcagcgttgtgtggccctggcccagctgctggtggagcagaacttcccggccatc
gccatccaccgcggtatgccccaggaggaacgactgtctcgctaccagcagttcaaggac
ttccagcggaggatcctggtggccaccaacttgtttggccgggggatggacatagagcgt
gtcaacatagccttcaactatgacatgccagaggactcagacacatacctccacagggtt
gccagggctggcaggtttggcaccaaaggactggctatcacttttgtgtctgacgagggc
gacgcccgcaccctgaacgacgtgcaggaccgcttcgaggtgaacatcagtcagcttcca
gatgagatcgacatctcctcctacattgaacctgcccggtag
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