Osmerus eperlanus (European smelt): 134041010
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Entry
134041010 CDS
T10927
Symbol
lingo4a
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 4a
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
oep Osmerus eperlanus (European smelt)
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
oep04131
]
134041010 (lingo4a)
Membrane trafficking [BR:
oep04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
134041010 (lingo4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
I-set
LRR_5
LRR_4
Ig_3
LRR_1
Ig_2
ig
LRR_LRWD1
LRR_Zer-1
LRR_RPS2
LRR_6
V-set
Motif
Other DBs
NCBI-GeneID:
134041010
NCBI-ProteinID:
XP_062343224
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All DBs
Position
20:complement(11817834..11825189)
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AA seq
607 aa
AA seq
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MFVETLVQWWLCRVIIYILAASVVLAADTSWPCPLCCRCSSEVLEVNCSRCQFPTVPDGL
STDCQLLNLTYNKIKTLERQQFSSLTQLWDLDLSDNILNMIEAEAFLGLQNLLTLRIARN
RLKIIPVGVFSGLTRLRLLDISQNEILVLLDFTFRDLAALQRIEAGENDLVYVSQRAFTG
LSSLQELHLDHCNLTSVPTEALAQLSGLTRLRFRQLGLTTLPNNSFRCLGRLRELVVSHC
PWLETLAENSLFGLNLTSLTICHCNLSTMPYTPLHHLVYLRYLDLSFNPITYIQGNRLRE
LLRLEELHLAGGGLLRIEPGAFRGLARFRLLNVSGNLLATLEEKAFHSVGNLETLRIDGN
PLACDCRLLWVVHRRLYLDFGGRPPVCTAPVQVQGRVFRDFSEAELPGLFTCRQARILNR
KPQQVRVDEGHTVLFYCSADGDPKPSIIWLSPQSIPLSPTGRIHVLPNNSLEVRYAQVQD
SGAYRCVASNAAGNDSFAVGLQVWGFSQNHSRRLHPALSFPAGNGSSHAHQPFPFDAKTL
LIAVTLGFLSFIGSVVICFIFMFFWSQGKGQIKHTATIDFVPRSTIASNGAGGGNRVESG
RFTMKLI
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtggagaccttggtccagtggtggctgtgcagggtcatcatctacattctggca
gcaagtgtggtgcttgctgccgacacctcatggccttgcccgctgtgctgccggtgtagc
tctgaggtgctagaggtgaactgctctaggtgccagttccccacggtaccagatggcctc
tcgacagactgccagcttctgaatctcacctataacaaaataaaaaccttggaacgtcag
cagttttccagtctaacccaactttgggacttggatctaagtgacaacatcctgaacatg
attgaggcagaagccttcttgggtttgcaaaacctgctaacgttgcgcatcgctcgtaat
cgtctcaagataatccctgtcggggtattctctggtctgaccagactgaggctcctggac
atcagtcaaaatgagattctggttttgcttgatttcacgttccgtgacttggcagccctg
cagaggattgaggcaggagaaaatgacttggtctatgtctcgcagagagcatttacaggc
ctgtccagtctacaagagcttcacctcgaccactgcaatctgacctctgtgccaacagag
gctctggcgcaactaagtgggctgacacgcttgcggttccgtcagcttggtctcacgact
ctgccaaataattctttcagatgccttgggcgtcttagggaactcgttgtatcacactgc
ccctggttggaaaccctggcggaaaacagtctctttggcttaaacctgacatctctaact
atctgccactgcaacctcagcactatgccctacactccactgcatcacctggtctacctt
cgctatcttgacctttcgtttaatccaatcacgtacattcagggcaaccgcctcagagag
ctgctacgactggaggagctccatctggcggggggaggactgctgcgtatcgagcccgga
gccttccgtggcctggcacgttttcgtttgctcaatgtttctggaaaccttctagctaca
ctcgaggagaaggctttccattccgtcggtaacttggaaaccctgcgtatagacgggaac
ccactggcgtgtgactgccggttgttgtgggtggtgcacaggcggctgtatctggacttc
ggtgggcgtccgccagtctgcactgccccggtccaggtgcagggacgggttttccgtgac
ttctctgaagctgagctcccgggtttgttcacctgccgtcaagcaagaattttaaaccga
aaacctcagcaagtacgggtcgacgagggacatacagtcttgttttactgcagtgcagat
ggcgaccccaagccttcaatcatctggctgagtccacagagcattcctctgtcgcccacg
gggaggatacacgttctgcccaacaactcgctggaggttcgctacgcccaggtgcaagac
agcggcgcataccggtgtgtggcgtccaatgctgcagggaatgacagcttcgccgttggt
cttcaagtgtggggattttcccagaaccactccagacggcttcacccggccttgtctttc
cctgctggcaacggttcatctcacgcacatcaaccttttccgtttgatgccaaaacactg
ttgatcgcggtgaccttgggatttctgtcgttcattggctctgttgttatatgttttatt
ttcatgtttttctggagccaggggaaaggtcagatcaaacacacagctacgatcgacttt
gtgccacgaagcaccattgcaagtaatggtgctgggggtggaaaccgcgtggaatctggc
agattcacaatgaaactgatttaa
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