Olea europaea var. sylvestris (wild olive): 111366117
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Entry
111366117 CDS
T05244
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
oeu
Olea europaea var. sylvestris (wild olive)
Pathway
oeu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oeu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111366117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oeu03041
]
111366117
Enzymes [BR:
oeu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111366117
Spliceosome [BR:
oeu03041
]
Complex C
Other components
Step II factors
111366117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
AAA_30
nSTAND3
ABC_tran
Sigma54_activ_2
AAA_16
TsaE
T2SSE
Flavi_DEAD
PhoH
Motif
Other DBs
NCBI-GeneID:
111366117
NCBI-ProteinID:
XP_022842551
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All DBs
Position
17:4756182..4763021
Genome browser
AA seq
1204 aa
AA seq
DB search
MGTEIEQIKDDGLKEGAGIKQRKDDGLKKLEYLSLVSKVCTELETHLGFGDKVLAEFITE
MGRKCETVDDFDAKLKQNGAEMPDYFVRTLLTIIHAILPPKKKEKSEIGSKEGEKSGFSA
LKIKDSRDRVKELEREIEEEARKQIHGEEKEEGKHRDSHRDRRERRRDRDRDRDRDRDRE
RERERDRDRGRYEDRDGYGDYNDRGRDRDRDRDRGRYERSKKDGYEEGREDERKERRKES
YSGSNEPELYTVYKGRVSRVMDTGCFVQLDELKGKEGLVHVSQIATRRITNAKDVVKRDQ
EVYVKVISVSGNKLSLSMRDVDQNSGKDLLPLKRSGEDEGLRTNPSGGNGGGTGSRIGIS
GIKITEENDIVPSRRPLKRMSSPERWEAKQLIASGVMSVKEYPMYDEDGDGMLYQEEGGA
EEELEIELNEDEPAFLNGQTRYSVDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQ
QRTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAYGKALTFGQRS
KLSIQEQRQSLPIYKLKNELVQAVHENQVLVVIGETGSGKTTQVTQYLAEAGYTAKGKIG
CTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPETVIKYMTDGMLLREILIDE
NLTQYSVIMLDEAHERTIHTDVLFGLLKKLVKRRPDLRLIVTSATLDAEKFSGYFFNCNI
FTIPGRTFPVEILYTKQPESDYLDASLITVMQIHLTEPEGDILLFLTGQEEIDYACQCLY
ERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYV
IDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAFHNEMSP
TSIPEIQRINLGMTTLTMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLT
KLGRKMAEFPLEPPLSKMLLASVDLGCSDEILTMIAMIQTGNIFYRPREKQAQADQKRAK
FFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLSIMDKYKLDVV
SAGKIFTKIRKAIAAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHEL
VMTTKEYMREVTVVDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLS
KRRA
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atggggacagaaattgaacaaattaaggacgatggattgaaggaaggggcaggaattaag
caaagaaaagacgatggattgaagaaactcgaatacttatccttagtttcgaaggtttgc
accgaactcgagacccatcttgggtttggagataaggttttagcggaatttattaccgag
atgggtcgaaaatgcgaaacagtggatgattttgatgctaaattgaaacagaatggggcg
gagatgcctgattattttgttagaactctgcttacgattattcacgctattttgccaccg
aaaaagaaagagaaatcggaaattggctcaaaggagggggagaaatcggggttttcagcc
ctgaaaattaaggacagcagggatagggtgaaggaactggagagggagattgaagaggaa
gctaggaagcagatccatggagaggaaaaagaagagggaaagcatagggacagccatcga
gatagaagagagaggagaagggacagagacagagacagagacagagacagagacagagaa
agagaaagagaaagagatagagataggggtagatacgaggacagggatggttacggtgat
tataatgatagaggaagggacagggacagggacagggacaggggtagatatgagaggagc
aaaaaggatggatatgaggaagggagggaggatgagaggaaggaaaggaggaaagaaagt
tatagtggatcgaatgaacccgaattgtacacggtatataaggggagagtttcaagggtg
atggatacaggctgctttgttcaacttgatgaattaaaagggaaggagggtttggtacat
gtatcccagattgcaactaggaggattacaaatgccaaggatgtggtgaagcgagaccag
gaggtctatgtaaaggtgatctcagtcagtgggaataaattgagtttgtcaatgagggat
gtggatcagaatagtggaaaggatttattgccgttgaagaggagtggggaggacgaaggg
ttgagaacgaatccttctggtggcaatggtgggggtacagggagtaggattggtatttca
gggattaagattacggaggagaatgacattgttccatcgcgacgtccattgaagaggatg
agctcgcctgagagatgggaggcaaagcagctgattgcttcaggtgttatgagtgtgaag
gagtatccgatgtatgatgaagatggggatggaatgctctatcaggaagaaggtggtgca
gaagaggagcttgagattgaattgaatgaggatgagccggctttcttaaatggccagact
cgttattctgtcgatatgtctcctgtgaagatattcaagaatcctgaggggtctttgagt
cgtgcggcagcacttcagtctgctctgataaaggagaggagagaagtgagagaacaacaa
caaagaacaatgctggattcgattccgaaggatttgaatcggccttgggaagacccaatg
ccagagactggtgagcggcatcttgctcaggagctaaggggtgttggtttgtctgcatat
gatatgccagagtggaagaaggatgcatatggtaaagcccttacttttggccaacgatca
aagctgtccattcaggaacagaggcagagcctgccaatatacaagttgaagaatgaacta
gttcaagctgttcatgaaaatcaagttctagttgtcattggtgagacaggttctggaaag
actactcaggttacccagtatctagctgaggcagggtacacagctaaaggcaaaattgga
tgcactcaacctcgtagagtggctgcaatgtctgttgctaagagagttgctgaggaattt
ggttgtcgtttaggggaagaagttggatatgctattcgttttgaggattgtacagggcca
gagactgttatcaagtatatgactgatggtatgcttctcagggaaattctgattgatgag
aatttgacacagtattcagtgataatgcttgatgaagctcatgagaggacaattcacact
gatgttctttttggactgctaaaaaaacttgtgaaacggagacctgacctccgtctgatt
gttacgtctgcaacgttggatgcggagaaattttctggctatttcttcaactgcaacatc
ttcaccattcctggtagaactttccctgtagaaatattgtacaccaagcagccggagagt
gactaccttgatgcatctcttatcactgtcatgcagattcacttgacagaaccagaaggc
gacatccttctcttcttgactggtcaagaggagatcgattatgcatgtcaatgtctctat
gaaaggatgaaaggtctaggcaaaaatgttcctgagctgattatcttaccagtgtacagt
gcccttcccagcgaaatgcaatccagaatatttgatcctgctcctccagggaagagaaaa
gtagttgttgctactaacattgctgaagcttctttgaccattgatggtattttttatgtt
atcgatccagggtttgcaaagcaaaatgtctacaatcctaaacagggacttgattcactg
gtgattactccgatatctcaagcatcagccaagcaaagagctgggcgagcaggacgcaca
gggcctggaaagtgctatcgcctctatactgagagtgctttccataatgaaatgtctccc
acctcgattccagagatccagaggatcaatcttgggatgactacccttactatgaaagct
atgggtatcaacgatctgttatcttttgactttatggacccaccttctcctcaagctctc
atttctgccatggaacagctgtacagtttaggagctctagatgaagaggggcttctgact
aagttgggtaggaaaatggctgaatttccattggaacctccactatctaagatgcttctt
gccagtgtagatctcggttgtagtgatgagattttgactatgattgcaatgattcagaca
ggaaacatcttttaccgacctagggaaaaacaagctcaagcagatcaaaaaagggcaaaa
tttttccagcccgagggagatcatctgacactacttgctgtttatgaggcatggaaagca
aaaaatttctcgggaccatggtgctttgaaaactttgtccagtctcgatcattgaggagg
gcacaggatgtcaggaaacaacttctctcaatcatggacaagtacaaattggacgttgtc
tctgctggaaaaatttttacaaagataaggaaggctattgcagcagggttctttttccat
gcagcgaggaaggatccacaagaaggttatagaacacttgttgagaatcagccagtctat
atacatccaagcagtgctctctttcaaagacaaccagactgggttatttaccatgagctg
gttatgactacgaaggagtatatgcgtgaggtcacagtcgtagatcccaagtggcttgtt
gaactggcaccaagattcttcaaggtggcagatcctacaaaaatgagcaagcgcaagaga
caagagcgcattgaacccctatatgacagataccacgaacctaattcttggcgtttgagt
aaacggagggcttaa
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