Olea europaea var. sylvestris (wild olive): 111366157
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Entry
111366157 CDS
T05244
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
oeu
Olea europaea var. sylvestris (wild olive)
Pathway
oeu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oeu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111366157
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oeu03019
]
111366157
Messenger RNA biogenesis [BR:
oeu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111366157
mRNA degradation factors
5'-3' decay
Lsm complex
111366157
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
111366157
NCBI-ProteinID:
XP_022842616
LinkDB
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Position
17:complement(5450045..5452266)
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AA seq
128 aa
AA seq
DB search
MSWAGPEDIYLSTSLASYLDRKLLVLLRDGRKLLGTLRSFDQFANAVLEGACERVIVGDL
YCDIPLGLYIIRGENVVLIGELDLEKEELPPHMTRVSVDEIKRAQKAEEVASDLKGTMKK
RMDFLDMD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggcaggcccagaggatatttacctctcaacttctcttgccagctatcttgac
aggaaactccttgtattgctgcgagatggacggaaattattggggactctccggtctttc
gatcaatttgccaatgctgttctagaaggtgcgtgcgagcgcgttattgttggtgatctt
tactgtgacatcccattaggtctatacataatccgtggggaaaacgttgtgttgattggc
gaactggatctggagaaagaagaacttcccccacatatgactcgcgtttctgttgatgag
ataaaaagggcacagaaagcagaagaggtggcttctgatcttaagggtactatgaaaaag
cggatggatttccttgatatggattaa
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