Olea europaea var. sylvestris (wild olive): 111367417
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Entry
111367417 CDS
T05244
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
oeu
Olea europaea var. sylvestris (wild olive)
Pathway
oeu03015
mRNA surveillance pathway
oeu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oeu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111367417
09123 Folding, sorting and degradation
03018 RNA degradation
111367417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oeu03019
]
111367417
03041 Spliceosome [BR:
oeu03041
]
111367417
Messenger RNA biogenesis [BR:
oeu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
111367417
mRNA cycle factors
Stress granule specific factors
111367417
Spliceosome [BR:
oeu03041
]
Complex C
Other components
Complex C specific factors
111367417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
RRM_Nup35
RRM_3
YflT
RRM_7
RRM_MARF1
SET_assoc
SET1_RBD
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
111367417
NCBI-ProteinID:
XP_022844041
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All DBs
Position
18:10028648..10033475
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AA seq
651 aa
AA seq
DB search
MAQIQVQHLNVAGTNGANVVAAPASSPSGGTSQSLTTSLYVGDLDFNVTDSQLYDLFNQV
GQVVSVRVCRDLETRRSLGYGYVNYSSPQDAARAIEVLNFTPLNNKSIRIMHSHRDPSIR
KSGTANIFIKNLDKSIDHKSLHDTFSSFGNILSCKIATDLNGQSKGYGFVQYENEESAKS
AIDKLNGMLMNDKQVYVGHFLRKQERESVFNKTKFNNVYVKNLAESTTDDDLKNIFGEHG
TITSAVVMRDGDGKSKGFGFVNFENADDAAKAVEALDGKKFDENEWYVGKAQKKSEREQD
LKSRFEQSAKEAVDKYRGVNLYIKNLDDSIDDNKLKELFSEFGTITSYKVMQDPGGISRG
SGFVAFSTPEEASRALSEMNGKMVISKPLYVALAQRKEERRARLQVQFSQMRPVAMPPSI
APRMAVYPPGGPGIGQQLFYGQAPPALIPQAGFGYQQQLVPGMRPGGAPMPNFYLPMVQH
GQRPGDRRGAGPGQQTQQPMPLIQQQILPRGRMYRYPPGRNVLEGPMPGVAGGMVSAPHD
MGSMLPRDATIAQPMPTTALASALANATPEQQRTMLGENLYPLVDQLEHEHAAKVTGMLL
EMDQTEVLHLLESPDALKAKVAEAMEVLRNVQSSSPVEQLSSLSLNDNLVS
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagattcaagtgcaacacctgaatgtggcggggactaatggggctaatgtagtg
gcagcgccggcgtcctcgccgagtgggggaacgagtcagtccctgacgacttcgttgtac
gttggggatttagatttcaatgtgactgactctcagctatacgatctgttcaaccaggtt
ggtcaggttgtttctgttcgggtttgtcgggatcttgaaactcgtcgtagcctcggctat
ggttacgttaactatagcagcccacaggatgctgcaagggcaattgaagtgttgaatttc
actcctctcaataacaagtcgattagaatcatgcactctcatcgggaccccagtatacgc
aaaagtggaactgcaaatatatttataaagaatttggacaagtctattgatcacaaatca
ttacatgacactttttcgagctttgggaacattctttcatgcaagatagcaacggatctg
aatggtcagtccaagggctatgggtttgtacaatatgagaatgaagaatcagcaaaaagt
gctatagataagttgaatggcatgctcatgaatgataagcaagtgtatgttgggcatttc
cttcgtaagcaggagagagaatcagttttcaataagacaaaattcaacaatgtttatgta
aaaaatctagctgagtctactacagatgatgatttgaagaacatttttggtgaacatgga
acaattactagtgctgtagtcatgagggatggagatggaaagtcaaaaggttttgggttt
gtcaattttgagaatgcagacgatgctgctaaagctgttgaagctctagatgggaagaaa
tttgatgaaaatgagtggtatgttgggaaagcccagaagaaatctgagagagagcaggat
ctgaaaagtagatttgagcagagtgcaaaggaagcagttgacaaataccgaggagtgaac
ttgtacataaaaaatttggatgacagcattgatgacaacaaactgaaggaactattttca
gagttcggtacaatcacttcatacaaggttatgcaagatcctggtggtataagcagagga
tctggattcgttgctttttcaactcctgaagaagcttctcgtgctctttctgagatgaat
ggcaaaatggtgattagtaagccactctatgttgcacttgcacagcgaaaagaagagaga
agagcaagattacaggtccagttctcacaaatgagacctgttgcaatgccaccgtcaatt
gctcctcgtatggcagtatatcctcccggtggccctggtattggacaacaactattttat
gggcaagctccccctgccttaattcctcaggctggattcggttatcagcagcagcttgtt
cctggcatgcgtcctggtggagctcctatgcctaatttttatttgccaatggtccaacat
ggtcagcgccccggtgataggcgaggagctggccctgggcaacaaactcagcaacccatg
ccattgattcaacaacagattcttccaagggggaggatgtatcgttatccccctggtcgg
aatgtgctagagggtccaatgcccggtgttgccggaggtatggtttctgcaccacacgac
atgggtagcatgcttcctcgagatgctacaatagcacagcctatgccaaccactgctctg
gcttctgcccttgcaaatgcaacacctgaacaacagagaacgatgttgggtgaaaacttg
taccctctagttgatcagttggagcatgagcatgcagcaaaagttacaggcatgcttctc
gaaatggaccagaccgaagttctgcatttacttgaatcaccagatgctttgaaggcaaaa
gttgctgaggctatggaggttttgagaaatgttcagtcgagcagcccagtcgaacaactt
tcttcactatccctgaatgataaccttgtttcttga
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