Olea europaea var. sylvestris (wild olive): 111368679
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Entry
111368679 CDS
T05244
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
oeu
Olea europaea var. sylvestris (wild olive)
Pathway
oeu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oeu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111368679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oeu03021
]
111368679
03019 Messenger RNA biogenesis [BR:
oeu03019
]
111368679
Transcription machinery [BR:
oeu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111368679
Messenger RNA biogenesis [BR:
oeu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
111368679
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
zf-CCCH
zf-CCCH_12
Torus
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
111368679
NCBI-ProteinID:
XP_022845836
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All DBs
Position
19:8231780..8240210
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AA seq
680 aa
AA seq
DB search
MDDGEGGLSFDFEGGLDMGQTQHTASVPVTHSLADPITASAAATNANNSSAAQVQVVQSA
DGMGGASGGGRRSFRQTVCRHWLRSLCMKGDSCGFLHQYDKSRMPICRFFRLYGECREQD
CVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLTSYSYGNSN
RFLQNRNSNYAQQTEKPQFQQGPSGVNQVGNTITTESANVHQQQNQQSHQQVSQTQMQNP
ANGHQNQASRTATSLPQGTSRYFIVKSCNRENLELSVQQGVWATQRSNEPKLNEAFDSVE
NVILIFSVNKTRHFQGCAKMISRIGGSVSGGNWKHAHGTANYGRNFAVKWLKLCELSFHK
TRHLRNPFNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISVAAESKREEEKAK
GVNPENGSENPDIVPFEDNEEEEEEESEEEDESYGQGFGPGAQGRGRGRGMMWPPHMPLA
HGARPFPGMQGFPPNMMGGDGFPMPDLFGMAPRGLGPYGPRFSGELMGPSSGMMFPGRPS
GGFGMMMGPGRPPFMGAGAATPARAGRPGGMPFFPPPSQPSQNFNRPKRDQKALSGYRND
RFSSGSNQGMAGSIGGHNDEALNQQRGKAQSEDQYDAGNNFRNDESESEDEAPRRSRHGE
GKKKRHSTEVDATTLSNQPM
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggatgacggagaagggggtttaagcttcgatttcgaagggggtctagatatgggtcag
acacagcatacagcatctgtacccgtcacccattcgttggcggacccgattaccgcctcc
gcagccgccaccaatgccaacaattcctcagctgcccaagttcaggtggttcagtcggcg
gatggtatgggcggggcgagtggcgggggcaggaggagcttccggcagacagtgtgtagg
cattggttgcgatccctttgcatgaagggtgactcctgtggattcctccaccagtatgac
aagtcgcggatgcccatctgtcggttttttaggctctacggggagtgccgtgagcaggat
tgtgtgtataaacacacaaatgaggatatcaaggagtgcaatatgtataaattaggattt
tgtccaaatggtcctgattgtcggtataggcatgcaaagttgcctggaccgccacctcct
gtggaagaagttcttcagaagattcaacagttgacgtcctacagctatggaaactcaaac
aggtttcttcaaaatcgtaattctaattacgctcagcagacagaaaaaccacagttccaa
caaggacctagtggggtgaatcaggtaggaaatacgatcacgacagagtcagctaatgtg
catcagcaacaaaatcaacagtctcatcagcaggtcagccagactcaaatgcagaatcct
gctaatggccatcaaaatcaagctagtaggactgcaacatccttgccccaaggaacatct
aggtattttattgtcaaaagttgcaaccgtgagaatctagaattgtccgtacaacaagga
gtatgggcaacccagcgaagcaatgagcctaaactaaatgaagcatttgattctgttgaa
aatgtcattttgatcttttcagtcaacaagacaaggcattttcagggttgcgcaaagatg
atatctagaattggtggctctgtcagtggaggaaattggaagcatgcacatggaactgcg
aactatgggcggaattttgctgtcaagtggttaaagctatgtgaattatccttccataaa
acacggcatttgagaaacccattcaatgagaacttaccagtgaaaataagcagggactgt
caagagttagaaccctctattggtgagcagttggcgtccttactctaccttgagccggac
agtgaacttatggcaatctctgtggcagcagaatcaaaacgagaagaggagaaggcaaag
ggagtcaatcctgaaaatgggagtgaaaacccagatattgtaccctttgaagataatgaa
gaggaggaagaggaggaaagtgaagaagaagatgaaagctatggacagggtttcggacca
ggagcacaaggaaggggaaggggcagaggaatgatgtggcctcctcacatgcctctagca
catggggcccgacctttccctgggatgcagggcttcccacctaacatgatgggtggtgat
ggttttcctatgcctgatctttttggtatggctccccggggcttaggaccatatggtcct
agattctcgggtgagctcatgggtcccagctcaggaatgatgtttcctggacggccttct
ggaggatttgggatgatgatgggtccaggaagaccccctttcatgggtgctggtgctgca
accccagcacgagctgggcgaccaggtggtatgccattttttccacctccatcacaacct
tcacaaaattttaatcgacccaagagagatcagaaagcattatctggctatcggaatgat
agattcagttctggttcaaatcaaggaatggctggatctattggtggacacaatgatgag
gcactgaatcagcaaagagggaaagctcaatcggaggatcaatatgatgctggaaacaac
ttcagaaatgacgaaagtgaaagtgaggacgaagctccaagaaggtcaagacatggggaa
ggaaaaaaaaagaggcacagtacagaggtagatgctaccaccctctccaatcaaccaatg
tag
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