Olea europaea var. sylvestris (wild olive): 111369840
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Entry
111369840 CDS
T05244
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
oeu
Olea europaea var. sylvestris (wild olive)
Pathway
oeu03018
RNA degradation
oeu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oeu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111369840
09123 Folding, sorting and degradation
03018 RNA degradation
111369840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oeu03019
]
111369840
03041 Spliceosome [BR:
oeu03041
]
111369840
Messenger RNA biogenesis [BR:
oeu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111369840
mRNA degradation factors
5'-3' decay
Lsm complex
111369840
Spliceosome [BR:
oeu03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
111369840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
111369840
NCBI-ProteinID:
XP_022847296
LinkDB
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Position
20:16456355..16458806
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AA seq
111 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRSGMICLCFARFFHLKSECLSADFTY
NT seq
336 nt
NT seq
+upstream
nt +downstream
nt
atgcttccactttctctgctcaagacagcccagggccaccctatgttggtggaactgaaa
aatggggaaacatacaatgggcatttggttaattgtgatacttggatgaacattcatctc
cgtgaagtcatatgtacctccaaggatggagataggttttggcggatgccagagtgctac
atcaggggaaatacgattaagtatcttcgagttccagacgaggtaattgataaagttcaa
gaagagacgaagagtcgttctggtatgatctgcctttgttttgctcggtttttccattta
aaatctgaatgtttatctgcagactttacttattga
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