Olea europaea var. sylvestris (wild olive): 111369882
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Entry
111369882 CDS
T05244
Name
(RefSeq) exosome complex component RRP4 homolog isoform X1
KO
K03679
exosome complex component RRP4
Organism
oeu
Olea europaea var. sylvestris (wild olive)
Pathway
oeu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oeu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111369882
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oeu03019
]
111369882
Messenger RNA biogenesis [BR:
oeu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
111369882
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
111369882
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Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
111369882
NCBI-ProteinID:
XP_022847359
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Position
20:17746155..17751128
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AA seq
328 aa
AA seq
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MRGMQLSLNKTQKLRLERALEQLESLSSKSNSDASVTIADNISVNCEDAILKGHGTTELD
GHVVATLCGVVERVNKLVYVRALRARYKPEIGDIIVGRVIEVAPKRWRLEINFSQDAVLM
LSSMNLPDGIQRRRTAIDELNMRSIFEENDVICAEVRGFQHDGCLHLQARSQKYGKLERG
QLLTITPYLVKKRKQHFHYLEQYGIDLILGCNGYVWVGEHVEVKDPMLVEDQLNKSEQPI
ADSENSMSSADEVDTCTPLETRQNICRTANAIRVLSTLGFVVTVEVILAVVNLSMSLSLD
IHEMLGPEFYVLVAEKEAERRSSLGKKR
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgagaggcatgcaattgtcattgaacaaaacccagaaactgagactagagagagcatta
gagcagttggaatctctttcatccaaatccaactctgatgcctccgtcaccatcgccgac
aacatttctgtcaactgcgaagatgccattctcaagggacatgggacaacggagttggat
gggcatgtggtggcaacactgtgtggagttgtggagcgagtgaataagcttgtctatgtg
agggctttaagggccaggtacaagcctgagattggtgatatcatagttggccgagttatt
gaggttgctccaaagcgctggagattggagatcaacttcagccaggatgcagttttgatg
ctttcttctatgaacttacccgatggcatccagaggcgacgaactgcaattgatgagctt
aacatgcgcagtatatttgaagaaaatgatgtcatatgtgctgaagtacgtggtttccag
catgatggttgtctgcacctgcaagcaagaagccagaagtatggaaagcttgaaagaggt
caattgcttacaattaccccgtatctggtgaagaagcgcaagcagcatttccactattta
gagcaatatggcattgacttgattcttggttgtaacggctatgtttgggttggtgaacat
gttgaagtgaaagatcccatgttagtagaggaccaattaaacaaatctgagcaaccaatt
gcagattcagaaaattcaatgagcagcgctgatgaagtcgacacttgtactccacttgaa
actaggcaaaacatatgcaggactgcgaatgccatccgtgtactttctaccttaggcttc
gtggttaccgtggaagtaatattggctgttgtaaacctgagcatgtctttgagtctggat
atacacgagatgctgggaccagagttttatgtgctagttgctgagaaagaagctgaacgt
cgaagctcattaggaaaaaagagatga
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