Olea europaea var. sylvestris (wild olive): 111372356
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Entry
111372356 CDS
T05244
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
oeu
Olea europaea var. sylvestris (wild olive)
Pathway
oeu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oeu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111372356
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oeu03019
]
111372356
03012 Translation factors [BR:
oeu03012
]
111372356
Enzymes [BR:
oeu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111372356
Messenger RNA biogenesis [BR:
oeu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111372356
Translation factors [BR:
oeu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
111372356
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
OB_NTP_bind
Helicase_C
HA2_C
R3H
Ank_2
nSTAND3
Ank_5
AAA_22
AAA_19
ATPase
HA2_N
AAA_23
PhoH
Rad17
AAA_16
ABC_tran
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
111372356
NCBI-ProteinID:
XP_022850420
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All DBs
Position
23:10527780..10537435
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AA seq
1158 aa
AA seq
DB search
MDETGKKRKRGMGTGASGGAGKKRQKKGKYRRVETMVAKATRIRLTQILEEFRKSDAGVY
TFEANMSNQDRAAVHMLCRKMGMRSKSTWRGDNREVSVYKTKKEEGKENLVSFRFSAEAK
DVLQDLFSRYPPDDREMAENKVGESSVRTNKVQKRKGDIFCKPAMTKSEIAREVVSVASR
IEKSPYLRQITEERSKLPIGSFRDTVTSALESHQVVLISGETGCGKTTQVPQFILDHVWG
KGETCKIVCTQPRRISATSVAERIATERGENVGDTVGYKIRLESKGGKHSSLLFCTNGIL
LRVLVGRGASKNTGNSVSDITHIIVDEIHERDHYSDIMLAIIRDMLPSYPQLRLVLMSAT
FDAERFSDYFGGCPIIRVPGFTYPVKSFYLEDVLSILRSTENNHRKCTSDDVTMEDSILT
EEYRVALDEAIDLALSNDEFDPLLDLISSEGGRKNFNYQHSITGVTPLMVFAGKGRVGDI
CMLLSFGADCRLQASDGNTALDWAEGFDHVEAAEIIKKHNEKTISHTEKETLLNKYLSSV
DPELIDHVLIEQLLRRICAESKDGAILVFLPGWDDINKTRERLQSSPFFKDESKFVIISL
HSMIPSVEQKKVFGLPPPGCRKIVLSTNIAETSVTIEDVVYVIDSGRMKEKSYDPYNNVS
TLQSSWISKASAKQREGRAGRCQPGICYHLYSKDRSASLPDFQVPEIKRIPLEELCLQVK
LLDPSCRIEHFLQKTLDPPVHETIHNGITVLQEIGALTLEENLTELGKRVGSLPVHPLKS
KMLLIAILLNCLDPALTLACAADYRDPFTLPTQPDEKKRAIDAKSELASLSGGLSDQLAV
IAAFEGWKIAKGKDEGSQFCSRYCISSSTMRMISRMRKQLETELRRSGFLPEAASNCSVN
AQDPGILHAVLVAGLYPMVGRLLRPKNGMKPIVETSSGDKVRLHPRSTLFKLLFKKFSGQ
PLIMFDEITRGDRGLHIRKCSVVGPLPLLLLAMEIVVAPANEKDYEDTYVNDSNEDKIES
HDKLIALREEKIMSSPDNAVKVIVDRWLPFESMALDVAHIYCLRERLSAAILYKVTHPRK
VLPEHLGASLKAMSCILSKDGMSEISLPLEPVDLSSTMISAANIGQLNGTTKMELNENPE
HHKSLTNNGKDENSVSIS
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaacggggaagaaaagaaagagaggaatgggaacgggagcatctggtggggct
gggaagaagaggcagaagaaagggaagtaccgaagagtagagaccatggttgccaaagct
actagaattcgtctgacccagattcttgaagagttccgtaaatctgacgctggagtgtat
acatttgaagctaatatgtcaaatcaggatcgagctgctgtgcatatgctatgtagaaaa
atgggaatgaggtccaaaagtacttggcggggggataatcgagaagtttctgtttataag
acgaaaaaggaagaggggaaggaaaatcttgtttctttcagattttcagctgaagcaaaa
gatgttttacaggatttgttttctcggtatccccctgatgacagagagatggctgagaat
aaggttggagaaagttccgtaagaactaataaagtacaaaaaagaaaaggcgacatattt
tgcaaacctgcgatgaccaagtctgaaattgcaagggaggtggtatcagttgcttcaagg
atagaaaaatccccatacttgagacagatcaccgaggagaggtctaagcttccaattgga
tctttcagggataccgttacatcagctttggaatctcatcaggttgtgctcatatctggt
gaaactggatgtggaaaaacaacacaggtcccacagtttattctggatcatgtatggggt
aaaggagagacatgtaaaattgtttgtactcagccacgaagaatctctgccacatcagtg
gcagagagaattgctacagaaagaggtgaaaatgttggagatactgtagggtacaagata
cggctggagagcaaaggtgggaagcattcatctcttctgttttgcaccaatgggattttg
ttgagggttctagttggcagaggagcttctaagaatactggaaatagtgtctctgacata
acccacatcattgtggatgaaattcatgaaagggaccactactctgatatcatgctagca
attatcagagacatgcttccttcatatcctcaattgcgcctggtgttgatgagtgccaca
tttgacgctgaacgattttcagactattttggtggctgtcctattattcgagttcctggg
tttacttatcctgtgaaaagtttctatctagaggatgtactttctatactgagatcaaca
gaaaacaatcaccgaaaatgtacttcagatgatgtgacaatggaggactctatcttaact
gaggagtacagagttgctcttgatgaagctattgacttggctttgtcaaatgatgagttc
gatcctctccttgatttaatatcttctgaagggggtcgaaaaaacttcaattaccagcat
tctataaccggagttacaccacttatggtatttgcaggaaaagggagagttggtgatatt
tgtatgctgctctctttcggagcagactgccgtttacaagccagtgatggaaatactgcc
ctcgattgggctgagggattcgatcacgtggaagctgctgaaattattaaaaaacacaat
gagaaaaccatttcccacactgaaaaggaaacattactcaataaatacttatccagcgtt
gaccctgaactaattgaccacgtgctcattgagcagctactaagaagaatatgtgctgaa
tcaaaagatggagccattctcgttttccttcctggttgggacgatataaataaaacaaga
gagcgtttacaatctagcccctttttcaaggacgagtccaaatttgtcattatatctctt
cattccatgatcccttcagtggagcaaaagaaagtttttggactgccccctccaggatgc
cgcaaaattgttctttcaactaatattgctgaaacttctgtcaccattgaggatgtcgtt
tatgtcatagacagtggacgaatgaaagaaaaaagttatgatccgtataataacgtgtca
actcttcaatcttcttggatttcaaaagcaagtgcaaagcaacgagaaggacgtgctgga
cggtgccaacctgggatttgttatcatctttactcaaaagataggtctgcttccttgcca
gatttccaagttcctgagattaagaggattccattagaagagctatgtttgcaggtgaaa
cttctagacccatcttgcagaatagaacattttttgcagaagacattggacccaccagtt
catgagaccatacataatgggatcacagttcttcaagagattggggctctgacactagaa
gagaatcttacggaacttgggaagagggttggatccctgccagttcatccactcaagagc
aagatgcttcttattgcaatattattgaattgtctggacccggcattgacgttagcttgt
gctgctgactatagagacccattcactctacccacacaacctgatgaaaagaagagagct
atagatgcaaaatctgagcttgcttcactttctggtggccttagtgatcagttagctgta
atagctgccttcgagggatggaaaattgcaaagggaaaagatgaaggatctcagttttgt
tctcgctactgcatatcttctagcactatgagaatgatatcacgaatgcgtaagcaactg
gagactgaattgcgccggagtggttttctaccagaagctgcatctaattgtagtgtgaac
gcgcaggacccaggaatactccatgctgtccttgttgccggtctttatccgatggttgga
agactgcttcgacctaaaaatggtatgaagcccattgtagagacttcaagtggtgataag
gttcggttgcatccccgctcaaccctcttcaagctactatttaaaaaatttagtgggcaa
cctttgatcatgtttgatgagataactcgtggagataggggtttgcacattagaaaatgt
agtgttgtgggtccacttccattattgttattggccatggagatcgtggtggctcctgca
aacgaaaaggactatgaagatacgtatgtcaatgatagcaatgaagataaaatagagagc
catgataagttaattgctctccgtgaagagaaaattatgtcctcccctgacaatgcagtt
aaagtcattgttgatcggtggcttcctttcgagtcaatggctcttgatgttgctcatatt
tactgcctaagagagagactctctgcagcaatattatacaaagtgacccatccacggaaa
gttcttccagaacatctcggtgcctctttgaaagcaatgtcctgtattttatcgaaggat
ggaatgtctgagatctcattgccattggaacctgtggacttgtcatctacaatgattagt
gctgccaatattggccagttgaatggtacgacgaaaatggaattgaatgagaatcctgaa
catcacaagtcgctgacgaacaatggaaaggatgagaactctgtctcaatatcgtaa
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integrated database retrieval system
