Olea europaea var. sylvestris (wild olive): 111373500
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Entry
111373500 CDS
T05244
Name
(RefSeq) protein PAT1 homolog 1-like isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
oeu
Olea europaea var. sylvestris (wild olive)
Pathway
oeu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oeu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111373500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oeu03019
]
111373500
Messenger RNA biogenesis [BR:
oeu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111373500
mRNA degradation factors
5'-3' decay
Decapping complex
111373500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
111373500
NCBI-ProteinID:
XP_022851798
LinkDB
All DBs
Position
Unknown
AA seq
812 aa
AA seq
DB search
MDGFGGGGGIEESSNPQNLKLFGTNATGDAKFDASQYAFFDNDVVEEVELGGLEDEEGDL
PPAGLDDEEFLLDREEGEALDSLSEIDDLACTFSQLNRGVSEPVGDQRSRGSSSAEWAQE
SDFPRWFDQSAFDAESARDSKGLSSQLYSSPAQLVESKSLYRASSYPESPQQHSHQNQEQ
KLRQHYSSERILIPKSPFTSYPPPGGRSQQASPTISSIHPNVPYGPGGYQLPISSLKLSP
FDNVQILSNALSNGSQFGANFPQSTQGILVNNQLQNQLLNPSSLHPGDRSSLPHKLLQQQ
LPHPHGLMPPQPPLQQNRMQHPFQPSYGHLSGLQSQHFNTLHPPSPPMMNNYDMLGLAEF
RDQRTKSMVKNRQGFNYPHHGSDFGNQRSDHGWPKFKSKYMSTDEIENILRMQLAATHSN
DPYVDDYYYQACLAKKSAGAKLKHHFCPTILKDSSSRAHANDEPHAFLQVDALGRISFSS
IHRPRPLLEVDCPNTSGSASAEQQAVEKPLDQEPMLVARVTIEDCICCLLEVDDIDRFLQ
FNQLQDGGSQLRHRRQVLLEGLASSLQLVDHLGKNGHTVDLAPEDDLVFLRLISLPKGRK
LISRYLQLLSPGGELARVVCMTIFRHLRFLFGGLPSDPGASETTVELTRTVSSCVRGMEL
KALAACLASVVCSAEHPPLRPVGSAAGDGASVLLKSVLERATQLLMDPNASGSCSMTNRM
FWQASFDAFFGLLTKHCFNKYDFVMQSFLTQASPAVIGSDAATAISKEMPVELLSASLPH
TSEQQKKLLLEFAQRSMPMLGLSSQGGESGGS
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atggatggatttggaggtgggggcggtattgaagagtcctcaaatcctcagaatcttaaa
ctgtttggtacaaatgctacaggagatgcgaaatttgatgcgtcacagtatgcattcttc
gataacgatgtagtcgaggaagtcgagctagggggattagaagatgaagagggtgatctc
cctccggctggacttgatgatgaagagttccttttggacagagaagagggtgaagcactg
gattctttgtctgaaattgatgatctagcatgcacattttcacagttgaacagaggtgtt
agtgagcctgttggagatcagagatccagaggaagttcatctgctgagtgggcgcaagag
tcagactttcctaggtggtttgatcagagtgcctttgatgctgaaagtgctcgggacagt
aaaggattgtcatcacagctatattcctcccctgcacagcttgtagaatccaagtcttta
tacagagcttcttcataccccgaatcgccacagcaacactcacatcaaaaccaagagcaa
aagctacgtcagcactactccagcgaacgaattcttattccaaaatcaccattcacttca
tatcctccacctggaggaagatcccagcaagcttcaccaaccatctcatctatccaccct
aatgttccatatggccctggtggatatcaattgccaatttcttctctcaaactttctcct
tttgataacgtgcagattctttcgaatgccttatctaatgggtcccaatttggtgcaaat
tttcctcagtcaacccaagggatcctggttaataatcagcttcagaaccaattgctgaac
ccaagtagtttacatcctggagatcgttctagcttgccgcacaagctgttgcaacaacag
ttaccccatccgcatgggttaatgcctccacaaccacctttgcagcagaacagaatgcag
cacccatttcagccatcctatggccatttatcagggttgcagtctcaacattttaatacc
ctacatcctccatcaccacccatgatgaacaactacgacatgcttgggttggctgaattt
agagatcagagaactaagtcaatggtgaaaaataggcaagggtttaattatcctcatcat
ggttctgattttggcaaccagaggagtgatcatgggtggccaaagttcaaatccaaatat
atgtcaactgatgaaattgaaaacattctcaggatgcagcttgctgctactcacagtaat
gatccttatgttgatgactactactatcaagcttgtctggcaaagaaatctgctggtgca
aagttgaaacatcatttctgcccgacaattttgaaggatagttcttccagagctcatgct
aacgatgagccacacgcttttcttcaggttgatgctcttgggaggatttctttctcttca
atacacaggccacgcccacttcttgaagttgactgtccaaatacatctggcagtgctagt
gctgaacaacaagcagttgaaaagcctttggatcaggagccaatgcttgtagctagggta
actattgaggattgcatttgctgcctccttgaagttgacgatattgaccgattcctacag
tttaatcagctacaagatggtgggtcccagttgagacatcggagacaggttctgcttgaa
ggtttagcatcatcactacagcttgtagaccatcttggcaaaaatggccacacagtggat
ttggctcctgaagatgatctggtgttcttaaggttaatttcccttcctaagggccggaaa
ctaatatcacggtaccttcaacttctttctcctggtggtgaacttgctcgagtagtctgc
atgaccatcttccgtcatttgagattcttgtttggtggacttccttctgatcctggtgcc
tccgaaacaacagtagaactcactaggactgtgtcatcttgtgttcgaggtatggagctt
aaagctcttgctgcatgccttgcatcagtggtttgttcagcagagcatccgcctctacgt
ccagttggaagtgcagctggagatggagcttctgttttacttaaatctgttcttgagagg
gcaactcagcttctgatggatcctaatgcttctggcagctgcagtatgactaacaggatg
ttttggcaggcctcttttgatgcattctttggccttctcacaaagcactgctttaataaa
tatgactttgttatgcaatctttcctcacacaggcctccccagctgttattgggtctgat
gcagccacagcaatcagtaaagaaatgcctgttgaactcttaagtgcgagtcttccccac
acaagtgagcagcaaaagaaactgctcttggaatttgcacagcggtccatgcccatgctg
ggtcttagtagccagggtggagaaagtggtggctcgtga
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