Olea europaea var. sylvestris (wild olive): 111377050
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Entry
111377050 CDS
T05244
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
oeu
Olea europaea var. sylvestris (wild olive)
Pathway
oeu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oeu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111377050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oeu03019
]
111377050
03041 Spliceosome [BR:
oeu03041
]
111377050
Messenger RNA biogenesis [BR:
oeu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
111377050
Spliceosome [BR:
oeu03041
]
Complex B
Other components
Prp19-related factors
111377050
Complex C
111377050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
ARM_TT21_C
TPR_19
ARM_TT21
PPR
Motif
Other DBs
NCBI-GeneID:
111377050
NCBI-ProteinID:
XP_022855854
LinkDB
All DBs
Position
Unknown
AA seq
872 aa
AA seq
DB search
MSISQELYPSQDDLLYEEELLRNPFSLKLWWRYLIARAESPFKKRSIIYERAVKALPGSY
KLWHAYLRERLEIVRNLPITHSQYQALNNTFERALVTMHKMPRIWIMYLQSLTQQKLITK
ARRAFDRALCALPVTQHDRIWEHYLIFVSQKGVPIETSLRVYRRYLKYDPSHIEDFIEFL
VISELWQEAAERLAGVLNDDQFYSIKGKTKHSLWLELCDLLTQHAKEIHGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRGLMEKARDIFEEGMTTVVTVRDFSVIFDSYSQFEESML
SVKMDMMSDSDVENDDEAEEEDESEDDDRLNIAKLEKRIKNFWLKDENDVDLRLAKLEYL
MDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTVDPMKAVGKSHTL
WVAFAKLYESHRDVANARVIFDKAVQVNYKAVDHLASVWCEWAEMELRHKNFKGALELMR
RATAEPSVEVKRRGNXFLLSSHMMFSLYGTLLLVLVAWXICNTXLELYXIIRKLVAVKLR
NVIWYLSKFVKRYGKSKLERARELFEHAVEMAPADAVKPLYLQYAKLEEDYGLAKRAMRV
YNQATKAVPPNEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKVVKTMCLKYAEL
EKSLGEIDRARALYKHSSQFADPRSDPDFWSKWHEFEVQHGNEDTFREMLRVKRSVSASY
SQTHFILPEYLMQKDQVQTLEEAKDVLKKAGVADDEMAALERQLVPAANNATTKDTARHL
GFVSAGVQNDGEEKVIANSEEIELPEASDSEDDEKVEIAQKDVPSAVFGGLVRKREETDN
EVEADGSAAAKSKENGEHLGALERIKRMKQGT
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatctcacaggaactttatccaagtcaagacgacctactttacgaggaagagcta
ctccgcaatcccttcagcctgaagctatggtggcgttatttaattgctcgcgccgaatct
ccgttcaaaaagaggtccattatttatgaaagggcagtgaaagcactaccgggcagctac
aagctgtggcacgcgtatctccgggaacgccttgagattgtacgaaatctgcccatcact
cattcgcaataccaagctcttaataacacttttgagcgtgccttggttacaatgcacaag
atgcctcgcatttggatcatgtacttgcagtccttgacccagcagaaattgattacgaaa
gcgcggagagcttttgatcgggctctatgtgcgcttccggttactcagcacgatcggatt
tgggaacattacttgatttttgtgtcacagaagggagtacccatagagacgtcgttgaga
gtttataggagatatttgaaatatgatcccagccatatcgaggactttattgagtttttg
gttatttcagagttgtggcaggaggctgcggagaggttggcaggtgttttgaatgatgat
cagttttattcaataaaaggcaagacgaagcatagtttgtggttggagttgtgcgacttg
ttgacacagcacgcaaaggagatacatgggttgaatgtggatgcaataattaggggaggg
attaggaagttcactgatgaggtagggaggctctggacgtccttggcagattattatata
aggcggggtttgatggagaaggcgcgagatatttttgaggaagggatgacaactgtggtg
acagtaagggattttagcgttatttttgactcttactcgcagtttgaggagagtatgttg
tccgttaaaatggatatgatgagtgatagcgatgttgagaacgatgacgaggcagaagag
gaggatgagagtgaggatgatgataggttgaatatagcgaagttggaaaagaggatcaag
aacttctggttgaaggatgagaatgatgtggatttgaggttggcgaagttggaatactta
atggatagaaggcctgagttggccaacagcgtgcttttgaggcagaatccacacaatgtg
gagcagtggcataggcgagttaagctttttgagggaaatcccacgaagcagatattgacc
tacacagaagcagtgagaacagtggacccaatgaaggcggtggggaagtctcatactttg
tgggttgcatttgcaaagctgtatgaaagtcacagagatgttgcaaatgcccgggtaata
tttgacaaagcagtgcaggtcaattataaggctgtagaccatctggcaagtgtttggtgt
gaatgggctgagatggagctaaggcataagaatttcaagggtgctctggagctgatgagg
cgtgctactgcagagccatccgttgaggtcaaacgcagaggtaacnnttttctcctttct
tctcacatgatgttttctctgtatggcacgctgcttttggtgctagttgcttggtaaata
tgtaacacttgattggaattgtattaaataataagaaaattggtggcggttaaattgagg
aatgtaatctggtacctttcaaagtttgttaaaagatatgggaagtcaaaattagagcgg
gctcgagagttatttgagcatgctgttgagatggccccagcagatgctgtgaaacctcta
tatctccagtatgcaaagttagaggaagactatggtctggcgaaacgagctatgcgtgta
tataatcaagcaacaaaggctgtcccacccaatgaaaaattgggcatgtatgaaatttac
attgcacgggctgctgaaatttttggtgttccaaagactagagaaatatacgaacaggca
attgaatccggtctgccagacaaggttgtcaagacaatgtgtctgaagtacgctgaactt
gagaagagccttggagaaattgatcgtgctcgagcattatataaacattcatcgcaattt
gcagatcctagatccgaccctgatttctggagtaaatggcatgagtttgaggtgcagcat
ggaaatgaagacaccttcagagaaatgctccgcgtgaaaaggagcgtttctgcaagctac
agtcagacacactttatccttccagagtatttgatgcaaaaggatcaggtgcagaccctt
gaggaagcaaaagatgtgttgaagaaagctggggttgctgatgatgagatggcagctcta
gaaaggcaattagtccctgcagccaacaatgctaccaccaaagatactgctaggcatttg
ggatttgtgagtgcaggtgtgcaaaatgatggtgaggagaaggttattgcaaatagcgag
gagattgagctgccagaggcaagtgattctgaagatgatgagaaggttgagatagcacag
aaagatgtcccaagtgcagtatttggaggcttggtgcggaaaagagaagagacagataat
gaagtcgaggctgatggctcagctgctgctaaaagtaaagagaatggtgaacatctaggt
gcgctggagagaattaaaagaatgaagcagggtacataa
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