Olea europaea var. sylvestris (wild olive): 111384011
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Entry
111384011 CDS
T05244
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
oeu
Olea europaea var. sylvestris (wild olive)
Pathway
oeu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oeu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111384011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oeu03019
]
111384011
03012 Translation factors [BR:
oeu03012
]
111384011
Enzymes [BR:
oeu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111384011
Messenger RNA biogenesis [BR:
oeu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111384011
Translation factors [BR:
oeu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
111384011
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
R3H
HA2_C
OB_NTP_bind
Ank_2
nSTAND3
HA2_N
Ank_5
ATPase
AAA_19
AAA_22
Ank_4
AAA_23
RHH_3
Rad17
AAA_16
ABC_tran
T2SSE
AAA_7
PhoH
Motif
Other DBs
NCBI-GeneID:
111384011
NCBI-ProteinID:
XP_022863988
LinkDB
All DBs
Position
Unknown
AA seq
1159 aa
AA seq
DB search
MATEASGGAVKKRQKKGKIVQEVTKVSEATRINVSKILEEFRKSDDEVYTFEANLSNRDR
AAVHILCRKMGLVSKSSGGGDNRRVSVYKTKKEVGKQGKENLVSFRFSAEAKDVLQDLFS
RYPPDDVEMSENNVGESSGRTDIVQPRKDDIFCKPAMTKSEIESQVVSLASRIENSPYLR
QITEERSKLPIGSFRDTVTSALESHQVVLISGETGCGKTTQVPQFLLDHVWGKGETCKIV
CTQPRRISATSVAERIATERGENVGDTVGYKIRLESKGGKHSSLLFCTNGILLRVLVSKG
AFKDTENYVSDLTHIIVDEIHERDRYSDFILAIIRDMLPSYPHLRLVLMSATIDAERFSD
YFGGCPIIRVPGFTHPVKSFYLEDVLPILRSTENNHLKCTSDDVTMEDSILTEEYRVALD
EAIDLALSNDEFDPLLDLISSEGGRKIFNYQHSITGVTPLMVFAGKGRIGDICMLLSFGV
DCHLQASDGNTALDWAERFNHVEAAEIIKKHIEKTFSHTEEEKLLNKYLSTVDPELIDYV
LIEQLLRRICTDSKDGAILVFLPGWDDINKTRERLQSSPFFKDASKFVIISLHSMIPAME
QKKVFRRSPPGCRKIVLSTNIAETSLTIEDVVYVIESGRMKEKSYDPYNNVSTLHSSWIS
KASAKQREGRAGRCQPGICYHLYSKLRAASLPDFQVPEIKRIPIEELCLQVKLLDPSGRI
DQFLQKTLDPPIHETIRNAIIVLQEIGALTLEEKLTELGERLGSLPVHPLTSKMLLIAIL
LNCLDPALTLACASDYRDPFTLPTLPNEKKTAVAAKSELASLSGGLGDQLAVVAAFQGWK
IAKGKGEESRFCSRYFISSSTMRMISRMRNQLENELRRNGFLPEDASNCSLNARDPGIVH
AVLVAGLYPMVGRLLPPKNGKKPIVETSSGDKVRLHPHSTLFKLLFKKFSIQPLIMFDEI
TRGDGGLHIRNGSIVGPLPLLLLAMEIVVAPANEKDVEGNDSGYEDTDVDDSDEDKKESH
DKSNARREEDVMSSPDNAVKVIVDGRLPFESTALDVAQIYCLRERLSAAILYKVTHPRKV
LPEHLGASLYAIACVLSYDGMSEISLPLETVDSLSTMIRAADIGQSNGRKKMATNQYPKH
YKPLTNHGKHQNSVPISKR
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagaagcatccggcggggctgtgaagaagaggcagaaaaaagggaaaatcgtg
caagaagttaccaaagtttccgaagccactcgaattaatgtgtccaagattcttgaagag
ttccgtaaatctgacgatgaagtgtatacatttgaagctaatctgtcgaatcgagatcga
gctgcagtgcatatcctatgtagaaaaatgggactggtgtccaagagttctgggggcggt
gataatcgacgagtttctgtttataagaccaaaaaggaagtgggcaaacaggggaaggaa
aatcttgtttctttcagattttcagcagaagcaaaagatgttttacaggatttgttttct
cggtatccccctgatgacgtagagatgtctgagaataacgttggagaaagttctggtaga
actgatatagtacaaccaagaaaagatgacatattttgcaaacctgcaatgaccaagtct
gaaattgaaagtcaggtggtatcgcttgcttcaagaatagagaattccccatacttgaga
cagatcaccgaggagaggtctaagcttccaattggatctttcagggataccgttacatca
gctttggaatctcatcaggttgtgctcatatctggtgaaactggatgcggaaaaacgacg
caggtcccacagtttcttctagatcacgtgtggggtaaaggagagacatgtaaaattgtt
tgtactcagccacggcgaatctctgccacatcagtggcagagagaattgctacagaaaga
ggggaaaatgttggagatacagtagggtacaagatacggctggagagcaaaggtgggaaa
cattcttctcttctgttttgcaccaatgggattttgttgagggttttagttagcaaagga
gcttttaaggatactgaaaattatgtctccgacttaacccacatcattgtggatgaaatt
cacgaaagggaccgctactctgatttcatactagcaattatcagagacatgcttccttca
tatcctcatttgcgtctggtgttgatgagtgcaacaattgatgctgaacgattttcagat
tattttggtggctgtcctattattcgagttcctgggtttactcatcctgtgaaaagtttc
tatctagaggatgtacttcctatactgagatcaacagaaaacaatcacctaaaatgtact
tcagatgatgtgacaatggaggactctatcttaactgaggagtaccgagtagctcttgat
gaagctattgacttggctttgtcaaatgatgagtttgatcccctccttgatttaatatct
tctgaagggggtcgaaaaatcttcaattatcagcattctataactggagttactccactg
atggtatttgctggaaaaggcagaattggtgatatttgtatgctcctctcttttggtgtg
gactgccatttacaagccagtgacggaaatactgctcttgattgggctgagcgatttaat
catgtagaagctgctgaaattattaaaaaacacattgagaaaaccttttcccacaccgag
gaggaaaaattactcaataaatacttatctactgttgaccctgaactaattgattatgtg
ctcattgagcagctactgagaagaatatgtactgactcaaaggatggagccattcttgtt
ttcctcccaggttgggatgatataaataaaacaagagagcgtttgcaatctagccccttt
ttcaaggacgcatccaaatttgtcattatatctcttcattccatgatccctgcaatggaa
caaaagaaagtttttagacggtcccctccaggatgccgcaaaattgttctttccactaat
attgctgagacttctctcaccattgaggatgttgtttatgtcatagaaagtggacgaatg
aaagaaaaaagttatgatccatataataatgtgtcaactcttcattcttcttggatttca
aaagcaagtgcaaagcaacgtgaaggacgtgctggacggtgccaaccagggatttgctat
catctttactcaaaacttagagcagcttccttgccagacttccaagttcctgagattaag
aggattccaatagaagagctatgtttgcaggtgaagcttctagatccatctggcagaata
gatcaatttttgcagaagacattggacccaccaattcatgagaccatacgtaatgcgatc
atagttcttcaagagatcggcgcactgacacttgaggagaaacttacagaacttggggag
aggcttggatctctgccagttcatccacttacgagcaagatgcttcttattgcaatttta
ttgaactgtttggacccagcattgaccttagcttgtgcttctgactatagagacccattc
actctgcccacactacctaatgaaaagaagacagctgtagctgcaaaatctgagctagct
tcactttctggtggccttggtgatcagttagctgtagtagccgccttccagggatggaaa
attgcaaagggaaagggtgaagaatctcggttttgttctcgctacttcatatcttcaagc
actatgagaatgatatcacgaatgcgaaatcaactggagaatgaattacgacggaatggt
tttctaccagaagatgcatctaattgtagcctaaatgcccgggacccaggaatagtccat
gctgtccttgttgccggtctttacccgatggttggaagactgcttccacctaaaaatggt
aagaagcccattgtggagacttcaagtggtgataaggttcggttgcatccccactcaacc
cttttcaagttattgtttaaaaaatttagcattcaacctttgatcatgtttgatgagata
actcgtggagatggggggttgcacattagaaatggtagtattgtcggtccgcttccatta
ttattattggccatggagattgtagtggctccagcaaatgagaaggatgttgagggtaac
gatagtggctatgaagatacagatgtcgatgatagtgatgaagataaaaaagagagtcat
gataagtcaaatgctcgccgcgaagaggacgttatgtcctctcctgataatgcagttaaa
gtcattgttgatgggcgtcttcctttcgaatcaacagcgcttgatgtcgctcaaatttac
tgcctgagagagagactctctgcagcaatattatacaaagtgacccatccgcggaaagtt
cttccagaacatcttggagcctctttgtatgcaattgcctgtgttctatcgtacgatgga
atgtctgagatctcattgccattggaaaccgtggactcgctatctacaatgattcgtgct
gccgatattggtcagtcgaatggtaggaagaaaatggcgacgaatcagtatccaaaacat
tataagccgctgacgaaccatgggaagcaccagaattctgtcccaatatcaaaaaggtag
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