Olea europaea var. sylvestris (wild olive): 111384097
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Entry
111384097 CDS
T05244
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
oeu
Olea europaea var. sylvestris (wild olive)
Pathway
oeu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oeu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111384097
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oeu03021
]
111384097
03019 Messenger RNA biogenesis [BR:
oeu03019
]
111384097
Transcription machinery [BR:
oeu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111384097
Messenger RNA biogenesis [BR:
oeu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
111384097
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
HIND
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
111384097
NCBI-ProteinID:
XP_022864101
LinkDB
All DBs
Position
Unknown
AA seq
903 aa
AA seq
DB search
MNGGVSRFENSTPLKTGAFTKSAMANDVASLKPPPPLIIDRFRGMLKEREAEFSVFNNGG
HDSDTNLGTEEIVRLYEIVLSELTLNSKPIITDLTMIAGQQRAHAKGIANAICDRIIEVP
VEQKLPSLYLLDSIVKNIGRDYVRHFSARLPEVFCEAYMQVHHSMRPAMRHLFGTWSTVF
PSSVLRMIEAQLQFSPGINNQQPGLAPSKASESPRPTHGIHVNPEYLEARHQIGHSTIDT
VGAKGLSSSGRACPGRTTSPSHQSLDAFGVDSYRRVAETASPSNSRFEYGLNRVTGKEEE
TNKLRAKNWHGESGQRLKNPAVLNKGVDLQGPRALIDAYGIDHREKKLNLKHIKVEQMGI
NGFDQTTASRTWQNTEEEEFDWEDMSPTLAPQSKDRFATQRAASLVTNFRSNSLSAQFSS
TSDSSIFEGVRPVSSSHGGISKITGSHRASNQIAASSYIQESWNLPYQPSQHYLNAKEGS
LHSGIGAFSTADEQKPPTIGNFSSVDGQFFGSHSVVDSLAPEIRSADASGLTKVWHPARL
QNSYPLPSHSALPPEMHIRSQFPISVNISKSIPYEQHLDKTGMSISNLPRAPSQFSRPVV
HPHLLPPRNNGYAAQGRGPPIGIALSNLDPVVQSSLPIINAPNTSFHLPGTAIPSLPRGP
PHGTTQSIPPGNNVQVAPNPPAQGALSGLISSLVAQGLISLTKQDSVGVEFDQDLLKVRH
ESAITALYTDLPRQCKTCGLRFKSQEEHSKHMDWHVNKNRTLRTRKLKPSPKWFVSVSMW
LSGAEAVGTEAVPGFLPADDVEMKEDEEMAVPADEDQNACALCGEPFDDFYSDEMDEWMY
RGAVYMNSQAGSTAGMDRSQLGPIVHAKCRSESNAPTEHFTKDEEFYLQELSEEGRQRKR
MRS
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atgaacggcggcgtttcaagattcgagaactctacgcctctcaagaccggcgcgttcacc
aagtctgcaatggcgaacgacgtcgcgtcgcttaagccgccacccccgttaatcatcgat
cggttcaggggcatgttgaaggagagagaggcggaatttagcgttttcaataatggaggc
catgactctgatacgaacttgggtaccgaggaaattgtgcggctttacgagattgttctg
tcggaactcactttgaattcgaagcctataattaccgatctgacgatgattgctggacag
cagagagcgcatgccaagggcatagctaatgctatttgcgatcggattattgaggttcca
gttgagcaaaaattaccttcgctgtatcttttggatagtattgtgaagaatataggcagg
gattatgttagacacttctctgcacgcttgcccgaggtcttctgcgaggcctacatgcaa
gtccaccatagcatgcgtcctgctatgcgccacctttttggtacctggtcgacagtgttc
ccatcatcagtacttcgcatgattgaggcgcagttgcaattttcccctggtataaataat
caacaacctggtttggctccctcgaaagcttcagaatctccacgcccaacacatggcata
cacgtaaatcctgaatacttggaagcacggcatcagattggtcattcaactatagacaca
gttggagccaaaggtttaagctcatctggtcgggcatgcccaggccgtacaacttcgcca
tcgcaccaatcacttgatgcatttggtgtggacagttatcgaagggttgctgaaacggcc
tcaccatctaattctagatttgaatatgggcttaacagagtgacgggcaaagaagaggag
acaaataaactgcgagcaaaaaattggcatggcgaatctggtcaacgtcttaaaaatcca
gctgtacttaataaaggagttgatcttcaaggacctagagccttgattgatgcttatgga
attgatcacagggagaaaaaattgaaccttaaacatataaaggttgagcaaatgggcata
aatggttttgaccaaacaacagcttccaggacatggcaaaatactgaagaggaggaattt
gattgggaagatatgagtccaactttagcaccccagagcaaggacaggtttgctacacaa
cgtgctgcgtctttggtgactaatttcagaagcaactcgttaagtgcgcaattttcttcc
acttctgattcttccatttttgagggtgttcgtcctgtcagttctagccatggaggaatt
agtaagattactggttcacacagggcctcaaatcagatagctgcttctagttatatccaa
gaatcatggaatttaccatatcaaccttcgcaacattatttgaatgccaaagaaggtagt
ttgcattcaggaattggagccttttccacagctgatgagcaaaagccgcctacaattgga
aatttctctagtgtagatggacagttttttgggtcgcactctgttgttgactctttagct
cctgagattcgatcagctgatgcatctgggttaacaaaggtatggcatcctgcaaggtta
cagaattcatacccattgccttcgcattctgctcttcctccagaaatgcacatcaggagt
caatttcctattagtgtcaatatcagcaagtcaattccttatgagcagcatctggacaaa
actggcatgtcaataagcaacttgcctcgagctcccagtcagttctcccgaccagtagtt
catccacatctactaccacctagaaataatggatacgctgcacaaggacgtggtcctcct
attggtatagccttgtctaatctagatccggttgtgcaatcatctttgcctatcatcaat
gccccaaacacatcattccatttaccagggacagctattccatctttacccaggggacca
ccacatggcacaactcaatcaataccccctggaaataatgttcaagttgcccctaaccct
ccagcacagggtgcactttctggtttaattagttctctcgtagcgcaaggtttgatatca
ttgacaaaacaggattctgtgggagtggagtttgatcaagaccttcttaaggtgcgtcat
gagtctgccataactgctctatacactgatcttcccagacaatgcaaaacatgtggcctt
cgattcaaaagccaagaagagcatagcaaacatatggattggcatgtcaacaagaaccgg
actttaagaacccgtaagctgaagccttctcccaagtggtttgtcagtgtcagtatgtgg
ctcagtggggccgaagcagtggggactgaagcagttccagggtttttaccggctgatgat
gtggaaatgaaagaagatgaagaaatggctgttcctgctgatgaggatcagaatgcttgt
gcattgtgtggagagccttttgacgatttctatagtgatgaaatggatgaatggatgtat
aggggggctgtctatatgaattcacaagccggatcaactgcagggatggacaggtcacag
ctaggtcctatagtacacgctaaatgcaggtctgagtctaatgctccaactgaacatttt
acaaaagatgaagagttttatttgcaggaattaagtgaagagggtcgtcaaaggaaaagg
atgcggagttag
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