Olea europaea var. sylvestris (wild olive): 111392358
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Entry
111392358 CDS
T05244
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
oeu
Olea europaea var. sylvestris (wild olive)
Pathway
oeu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oeu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111392358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oeu03019
]
111392358
03041 Spliceosome [BR:
oeu03041
]
111392358
03009 Ribosome biogenesis [BR:
oeu03009
]
111392358
03016 Transfer RNA biogenesis [BR:
oeu03016
]
111392358
Enzymes [BR:
oeu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111392358
Messenger RNA biogenesis [BR:
oeu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
111392358
Spliceosome [BR:
oeu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
111392358
Complex C
U4/U6.U5 tri-SnRNP related factors
111392358
Ribosome biogenesis [BR:
oeu03009
]
Eukaryotic type
Pre-60S particles
Helicases
111392358
Transfer RNA biogenesis [BR:
oeu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
111392358
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
MTR4-like_stalk
Motif
Other DBs
NCBI-GeneID:
111392358
NCBI-ProteinID:
XP_022873460
LinkDB
All DBs
Position
Unknown
AA seq
600 aa
AA seq
DB search
MVVMNFSRGKNPLDATLWRCADFYRGPVKSPSYYMSSNYKSSNYNRVGKAKTFSTRRCGL
ALISTEDNSSSPNFQGRRGKDEKGICIIMIDEKMEMNVLKDMVLGKPAPLVSTFRLSYYS
ILNLMTRAEGQFTAEHVIRNSFHQFQYEKALPDIGKKVSKLEEEAAVLDASGEAEVTEYH
KLHLEIAQVEKKMVAEIMRPERVLYFLQSGRLVKIRGSGKDWGWGVVVHVVNKTPAALGS
MPAALASSCGSSYIVDTLLHCSFGSSDNGSRPKPCPPCPGEKGEMHVVPVQLPLISAVSK
LRIAVPSDLRPTEARQSVLLAVQELEKRFPQGIPKLNPMKDMGIEEPGVVELVNQIEELE
QKLFSHPLHKSQDEHQIRSFRRKSELNHEIQQLKSKMRDSQLQKFRIELRNRSRVLKKLG
HIDADGVVQLKGRAACFIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPGDKSGKID
VTAVLVKPLQQLQDSARRIAEIQRECGLEVHVEEYVEAAVRPCLMNVIHLWSEGKSFKVV
IEETDILEGSIIRLVRRLDEFLNQLKAAAHAVGEADLENKFAAASGSLRRGIMFANSLYL
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggtagttatgaatttttcccgaggcaaaaaccctctcgacgcaacgttgtggcgttgc
gctgatttctacagaggaccagttaaaagcccatcttactatatgtcttcaaactacaaa
tcttcgaactacaacagagtcggaaaggcaaaaaccttctcgacgcgacgttgtggcctt
gcactgatttctacagaggacaattcatcatcaccaaatttccaaggacgtcgtggtaaa
gatgagaagggtatttgtattataatgattgacgaaaagatggaaatgaatgtccttaag
gacatggttctgggtaaaccagctccattggtcagtactttcaggctaagctactactct
atcctgaatttaatgactcgtgctgagggacaatttactgctgagcatgtcatcagaaat
tcctttcaccagtttcagtatgagaaggcattgcctgacattgggaaaaaggtctccaag
ctggaagaggaggctgcagtgcttgatgcttctggagaggctgaggttactgaatatcat
aagctacatcttgagatagcccaagttgaaaagaaaatggtggcagaaattatgcggcct
gaaagagttctctatttccttcaatctggtaggctggttaaaataaggggaagtggcaaa
gattggggttggggagttgtagtccatgtggtgaataaaactccagctgcattgggttct
atgcctgcggcgcttgcttcttcctgtggtagtagttatattgtggacactttgcttcac
tgctcttttggctcaagtgataatggttctcgacccaaaccatgtcctccctgtcctgga
gaaaagggggaaatgcatgtggttcctgttcagttgcctcttatttctgcagtcagcaag
ctcaggattgctgttccttctgatttacggccaacagaagctagacagagtgttctgctt
gctgtacaggagcttgaaaaacgttttccgcagggcattccaaagcttaatcctatgaag
gacatgggaattgaagaacctggagttgttgagctcgttaaccagattgaggaacttgaa
cagaaattattttctcacccattgcataagtctcaagatgaacatcagattagaagtttc
cgcagaaaatcagaattgaatcatgaaattcaacagctaaagtccaaaatgcgtgattca
cagcttcaaaaatttcgcattgaacttagaaaccgctcacgggttctgaaaaagctgggg
cacattgatgctgatggtgttgttcagttgaaaggacgagcagcctgtttcatagataca
ggagatgagctccttgttactgaattgatgttcaatggtaccttcaatgatcttgatcat
catcaagtcgctgctctggcaagttgcttcattccaggagacaaatcagggaaaatagat
gtaacagcagtacttgttaaaccactgcaacagcttcaagacagcgctagaagaatagca
gagatacaacgtgaatgtggactcgaagtacacgtggaggaatatgttgaggcagcagtc
agaccatgcttgatgaatgtgatccacctgtggtcagagggaaaatcttttaaagttgtt
atagaagagacagacatcctcgaaggtagcattatacgactagttagaaggctggatgaa
tttttaaaccagttgaaagctgctgctcatgcggtcggggaagctgatttagagaacaaa
tttgcagcagctagtggaagccttcgtcgagggataatgtttgcaaattcactctatctc
tga
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