Olea europaea var. sylvestris (wild olive): 111396959
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Entry
111396959 CDS
T05244
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
oeu
Olea europaea var. sylvestris (wild olive)
Pathway
oeu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oeu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111396959
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oeu03021
]
111396959
03019 Messenger RNA biogenesis [BR:
oeu03019
]
111396959
Transcription machinery [BR:
oeu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111396959
Messenger RNA biogenesis [BR:
oeu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
111396959
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf-CCCH_2
zf_CCCH_4
zf-CCCH
Torus
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
111396959
NCBI-ProteinID:
XP_022879362
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All DBs
Position
7:10516164..10524447
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AA seq
562 aa
AA seq
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MLNQTYIFAHIYPNFFIIMDDGEGVLSFDFEGGLDTGPTQPTASVPATHSSADPITDSGP
AANANNSSAAQVQVVQAADGLGGGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPI
CRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPSVEEVLQ
KIQQLASFNYGNPNRFQNRNSNYAHQTEKPQFQKGLDGVNLVGTTTMTESSNVHQQQNQQ
SHQQVSQAQVQNLPNGQQNQASRTATSLPQGTSRYFIVKSCNRENLELSVQQGEWATQRS
NEPKLNEAFDSVENVILIFSVNKTRHFQGCAKMTSRIGGSISGGNWKHAHGTAHYGRNFD
VKWLKLSELSFHKTRHLRNPFNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMASS
LAAESKREEEKAKGIKPGNESENPDIVPFEDNEEEEEEESEEEDESYGQGFGPGAQGRGR
GRGIMWPPHMPLAHGPRPFPGMQGFPPNMMGGDGFPMPDLFGMAPGGFGPYGPRLSGELM
GPGLGMMFPGRPSGGFGMMVGP
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgctaaatcaaacttacatatttgcacatatatacccgaatttttttataattatggat
gacggagaaggagttttaagcttcgatttcgaggggggcctagatacgggcccaacacag
cccacagcatctgtacctgcaacccattcatcggcagacccgatcacagattcgggccca
gccgccaatgccaacaattcatcagctgcccaagttcaggtggtccaggcggcggatggg
ctgggagggggcaggcggagcttccggcagacggtgtgcaggcactggttgcgatcgctt
tgcatgaagggtgatgcctgtggatttctccaccagtacgacaagtcacggatgcccatc
tgtaggttcttccgcctctatggggagtgccgtgagcaggactgtgtgtataaacataca
aacgaggatatcaaagaatgcaacatgtataaattgggattttgtccaaatggtcctgat
tgtcgatataggcatgcaaagctgcccggacctccaccttccgtggaagaagttcttcag
aagatccagcagttggcatccttcaactatggaaacccaaacaggtttcaaaaccgtaat
tctaattatgcccaccagacagaaaaaccacagttccaaaaagggctcgatggggtgaat
ctggttggaactacgaccatgacagagtcctctaatgtgcatcagcaacaaaatcaacag
tctcatcagcaggtcagccaggctcaagtacagaatcttcctaatggccagcaaaatcaa
gctagtaggacagctacatccttgccccaaggaacatctaggtattttattgtcaaaagt
tgcaaccgtgagaatctggaattgtctgtacaacaaggagaatgggcaacccaacgaagc
aatgagcctaaactaaatgaagcttttgattctgttgaaaatgtcattttgatcttttca
gtcaacaagactaggcattttcagggttgtgcaaagatgacatctagaatcggtggctcc
atcagtggaggaaattggaagcacgcacatggaactgctcactatgggcggaattttgat
gtcaagtggttaaagctcagtgaattgtccttccataaaacgcggcatttgagaaaccca
ttcaatgagaacttaccagtgaaaataagcagagactgtcaagagctagagccctctatt
ggagagcagttggcctccttactctaccttgagccagacagtgaacttatggctagctca
ctggcagcagaatcaaaacgagaagaggagaaggcaaagggaatcaaacctggcaatgag
agtgaaaaccctgatattgtaccctttgaagataatgaagaggaggaagaggaagaaagt
gaagaagaggatgaaagctatggacagggtttcggaccgggagcccaaggaaggggaagg
ggcagaggaataatgtggcctcctcacatgcctctagcacatggaccccgacctttcccc
gggatgcagggcttcccccctaacatgatgggtggtgatggttttcctatgcctgatctt
tttggtatggcacctgggggctttggaccatacggtcctagattgtcgggtgagctcatg
ggccccggcttgggaatgatgtttcctggccggccttctggaggatttgggatgatggtg
ggtccatga
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