Olea europaea var. sylvestris (wild olive): 111397154
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Entry
111397154 CDS
T05244
Name
(RefSeq) THO complex subunit 4D-like isoform X1
KO
K12881
THO complex subunit 4
Organism
oeu
Olea europaea var. sylvestris (wild olive)
Pathway
oeu03013
Nucleocytoplasmic transport
oeu03015
mRNA surveillance pathway
oeu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oeu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111397154
09122 Translation
03013 Nucleocytoplasmic transport
111397154
03015 mRNA surveillance pathway
111397154
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oeu03019
]
111397154
03041 Spliceosome [BR:
oeu03041
]
111397154
Messenger RNA biogenesis [BR:
oeu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
111397154
TREX complex
111397154
Spliceosome [BR:
oeu03041
]
Complex C
Other components
EJC/TREX
111397154
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
111397154
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_3
RRM_10
YHR127W_C
RRM_5
EBNA2_Core
Motif
Other DBs
NCBI-GeneID:
111397154
NCBI-ProteinID:
XP_022879681
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All DBs
Position
7:15889772..15896725
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AA seq
268 aa
AA seq
DB search
MASLDMSLDDVIKSRRTSDRGRGRGRPRRGRGSGGSFRGGRTTEAPRRGPLGINARPSAY
TIAKSFRRTKNLPWQNGLFEDSLRVAGLSGLANGTKLYVSNLDVGVTNDDIRELFSELGE
MVRYAIHYDKTGRPSGTAEVVFARRSDAFQALKRYNNVQLDGKPMKIEIIGTNAEIPLSA
RVNVVGGSNGKKRTVVMTPGPGRSRVGSSSANRNVGQNSRGGLRNGRGGGRGRGRGRGGG
RWRKKNVEKSAGELDTELENYHTESMQT
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
atggcttctctagatatgtctcttgatgatgtgataaagagcaggcgcactagtgataga
ggcagaggacgaggcaggcctcgacgtggtagaggctcgggagggtccttcagaggtgga
aggacaactgaggctcctcgcagaggtccacttggcataaatgctcggccatcagcttac
accattgccaagtccttccgcagaaccaagaatttgccatggcagaatggtctgtttgaa
gatagccttagagttgctgggttgtcaggattagcaaatggtacaaagctatatgtctcc
aacttggacgttggagtgacaaatgatgatataagggaactattttcagagctcggggag
atggtaagatatgcaattcactatgacaagactggacgaccaagtggcacagctgaagtg
gtttttgctaggagaagtgatgcattccaagctcttaagagatataacaatgtccaactg
gatgggaagcccatgaagatcgaaataatcggtactaatgcagagatccctctatcagct
cgcgtgaatgtagttggaggatcaaatggaaaaaagaggacagttgttatgacgcctgga
ccaggtcgttccagagttggctcgagttctgctaatcgcaatgttggccaaaatagccgt
ggtggtttgaggaatggacgaggaggtggacgtggacgtggacgtggcagaggcggtggt
cgctggagaaagaaaaatgtcgaaaaatcggctggtgaacttgacacggagcttgagaac
tatcataccgaatcaatgcaaacatga
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