Olea europaea var. sylvestris (wild olive): 111397168
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Entry
111397168 CDS
T05244
Name
(RefSeq) sm-like protein LSM8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
oeu
Olea europaea var. sylvestris (wild olive)
Pathway
oeu03018
RNA degradation
oeu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oeu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111397168
09123 Folding, sorting and degradation
03018 RNA degradation
111397168
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oeu03019
]
111397168
03041 Spliceosome [BR:
oeu03041
]
111397168
Messenger RNA biogenesis [BR:
oeu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111397168
mRNA degradation factors
5'-3' decay
Lsm complex
111397168
Spliceosome [BR:
oeu03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
111397168
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Motif
Other DBs
NCBI-GeneID:
111397168
NCBI-ProteinID:
XP_022879697
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Position
7:complement(16481908..16485221)
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AA seq
98 aa
AA seq
DB search
MSSGLGLENLVDQTISVITNDGRNIVGILKGFDQATNIILDESHERVYSTKEGVQQLVLG
LYIIRGDNISIVGELDEELDASLDLSLLRAHPLKPVIH
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atgtctagtgggcttggacttgagaatcttgttgaccaaacaatctcagtgatcacaaat
gatgggcgaaatatagtgggaattctgaaaggttttgaccaggctactaatataattctt
gatgagtctcatgaacgggtgtattccacaaaggaaggtgtacagcaacttgtgttgggt
ctctacatcatcagaggagacaacattagcatcgttggagaactagacgaagagctagat
gcaagcttggacttgtcactactgagagctcatcctctgaagccagttatacattga
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