Olea europaea var. sylvestris (wild olive): 111397572
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Entry
111397572 CDS
T05244
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
oeu
Olea europaea var. sylvestris (wild olive)
Pathway
oeu03013
Nucleocytoplasmic transport
oeu03015
mRNA surveillance pathway
oeu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oeu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111397572
09122 Translation
03013 Nucleocytoplasmic transport
111397572
03015 mRNA surveillance pathway
111397572
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oeu03019
]
111397572
03041 Spliceosome [BR:
oeu03041
]
111397572
Enzymes [BR:
oeu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111397572
Messenger RNA biogenesis [BR:
oeu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
111397572
Spliceosome [BR:
oeu03041
]
Complex C
Other components
EJC/TREX
111397572
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
111397572
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
111397572
NCBI-ProteinID:
XP_022880334
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All DBs
Position
7:25764846..25770511
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AA seq
427 aa
AA seq
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MGEMKENDAYEEELLDYEEEDEKAPDSVTKVNGESAKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALVL
CHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILAL
ARDKDLSLRNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVNR
AAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQID
TSTYMPA
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagagatgaaggagaacgacgcatacgaggaggagcttctcgactatgaggaagaa
gatgaaaaagctcccgactctgtgaccaaagtgaacggcgaatcagccaagaagggttac
gtgggaattcacagttccggattcagagacttccttttgaaaccagagcttctaagggct
attgtagattctggatttgagcatccttcagaagtgcaacatgagtgtatacctcaagct
attctgggaatggatgttatttgccaagcaaaatctggaatggggaagactgctgttttt
gttctctcaacattgcagcagattgaacctgttgccggtcaagttgctgctcttgttcta
tgtcatacaagagaactagcataccagatatgtcatgaatttgagcggttcagcacatac
ttgccagacatcaaagttgctgttttttatggtggtgtcaacatcaaaatccacaaagat
cttctgaaaaatgaatgccctcacattgtagttggaacacctgggagaatccttgctcta
gctagagacaaggacctttctttgaggaacgtgaggcattttatactggatgaatgtgat
aagatgcttgaatctcttgatatgagaagagatgtccaggagattttcaagatgacccct
catgacaagcaagtaatgatgttttctgctacactcagcaaagagatccgaccagtttgc
aagaaatttatgcaagatcctatggaaatttatgtggatgacgaagccaagttgaccctt
catggtcttgtacagcactacatcaaattgagcgagctggagaagaaccggaagctgaat
gacttgttggatgcgctggactttaatcaagttgtcatctttgtcaagagtgtgaacaga
gcagcggagcttaataagttgcttgtggagtgtaattttccatctatttgcatccactct
ggcatgtctcaggaagaaagattgacacgctacaagggcttcaaggaagggcataagagg
atccttgttgcaacagatttggttggtagaggaattgatattgaaagggttaacattgtt
atcaactatgacatgccagattctgcggacacttatctgcacagggtgggaagagctgga
aggtttggtaccaaaggtcttgcaatcacatttgtttcttctgcttcggactctgatgtt
ctcaatcaggtccaggagaggtttgaagtggatataaaagagcttcctgagcagattgat
acatcaacatacatgcctgcttag
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