Olea europaea var. sylvestris (wild olive): 111397987
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Entry
111397987 CDS
T05244
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
oeu
Olea europaea var. sylvestris (wild olive)
Pathway
oeu03020
RNA polymerase
oeu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oeu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111397987
09124 Replication and repair
03420 Nucleotide excision repair
111397987
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oeu03021
]
111397987
03400 DNA repair and recombination proteins [BR:
oeu03400
]
111397987
Enzymes [BR:
oeu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111397987
Transcription machinery [BR:
oeu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
111397987
DNA repair and recombination proteins [BR:
oeu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
111397987
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_6
RNA_pol_Rpb1_2
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
111397987
NCBI-ProteinID:
XP_022880719
LinkDB
All DBs
Position
7:complement(16938869..16947557)
Genome browser
AA seq
1642 aa
AA seq
DB search
MDIRFPYSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKPGGLSDPRLGTI
DRKMKCETCMASMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADERLTV
SSINCHGNNNEIHKVSIGHHFTNEIMTSLSIHTLKEEEELPFINKMMNNSQHRYVSIGVP
WSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDQ
HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDG
DEMNMHVPQSFETRAEVLELMLVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKD
VFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPRQINLLRYAAWHQESEKGFIT
PGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ
NAFSIGIGDTIADASTMERINETISNAKNEVKELIRSAQEKQLEAEPGRTMMESFENRVN
QVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF
IDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQR
RLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQPLESLKLKKSNFNNMYRY
EIDDPDWNPSYMLPEAVEDLKTIREIRSVFDAEVQKLEVDRYQLATEIATTGDNSWPLPV
NIKRLVLNAQKTFKVDFRRPSDMHPMEIVEAVDKLQERLKVVVGDDYLSMEAQKNATLFF
NILLRSALASKRVLKEYRLTREAFDWVIGEIESRFLQSLVASGEMIGCVAAQSIGEPATQ
MTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVGKTKERAKNVQCAL
EYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDEEIDPDKISPWLLRIELNRE
MMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELQDESAEDD
VFLKKIESNMLTEMALRGIPDINKVFIKNSKLNKFDETEGFKAENEWMLDTEGVNLLAVI
CHEDVDARRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDGSYVNYRHLAILCDTMTY
RGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDYLRGVTENIMLGQLAPIG
TGDCSLLLNEEMLKQAIEIPLPSYMEGGMDFGMTPARSPHSGTPYHDGMMSPSYLLSPNL
RLSPVTDAQFSPYAGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSP
TYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP
TSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPG
YSPTSPSYSPTSPSYSPTSPSYNPTSPSYNPSARYSPSLAYSPTSPKITPSSPYSPSSPS
YSPTSPSYSPTSPTYSPSSPTYSPSSPYNSGASPDYTPSSPPYSPSGGYSPSAPGYSPST
TSQYSPRVSERDDKSVRNDKGR
NT seq
4929 nt
NT seq
+upstream
nt +downstream
nt
atggatatacgctttccctattcgccggcggaggtggcaaaggtccgagtggtccaattt
ggcatcctcagtcccgatgaaatcaggcaaatgtctgtggttcacatagagcatagtgag
acgacggaaagaggtaagccgaaaccagggggattgagtgacccacgtctggggaccatt
gatcggaagatgaagtgcgagacatgtatggcgagcatggcagagtgccctggacacttt
ggtcaccttgagcttgcgaagcccatgtttcatattggcttcttgaagactgtgctcagc
atcatgcgatgtgtttgcttcaattgctccaaaatattagctgatgagagattgactgtg
agctccattaactgccatggaaacaataatgaaatacacaaagtaagtattggacatcat
tttacaaatgaaatcatgacttcattaagcattcacacactgaaggaagaggaagagctt
ccatttattaacaagatgatgaataatagtcagcataggtatgttagtataggagtacca
tggagtattgcactgaatctcacctatccagaaacagttactccttacaacattgaaagg
ttgaaagagcttgtggaatatgggcctcatcctcctccaggtaaaactggggcgaagtat
ataattagggatgatggacaaaggcttgatctacggtacttgaagaaaagcagtgatcaa
catctagaacttggatataaggtggaacggcatttgaatgatggggactttgtcctgttc
aatcggcaaccaagtctccacaaaatgtcaataatggggcatcgaatcaagatcatgcct
tattcaaccttccgcctaaacttgtctgttacttcgccctacaatgctgattttgatggg
gatgaaatgaacatgcatgttccccagtcatttgaaactagagctgaagtgcttgaactg
atgttggttcctaaatgcattgtgtcacctcaatcaaatcggcctgtaatggggattgtc
caagatacacttttagggtgccggaaaattaccaaaagagatacatttattgagaaagat
gttttcatgaacattttgatgtggtgggaggattttgatggcaaagtaccagctccagca
attttaaaacctaggcctctttggactggaaaacaagttttcaatctaataattccaaga
cagataaatctcctgagatatgcagcatggcatcaagaatctgaaaaaggattcataact
ccgggggacactcaagttcgaatagagaaaggagagttactttctggcaccctatgcaag
aagacacttgggacttccactggaagtcttatacatgttatttgggaggaagttggtcca
gatgctgctcggaagtttctgggacatacacaatggctggtcaattattggcttttgcag
aatgcttttagcattggaattggagatacaattgctgatgcttcaacaatggagagaatt
aatgaaaccatttcaaatgcaaagaatgaggtgaaggaacttatcaggtctgcgcaggaa
aagcagttggaggctgaacctggtcgaacaatgatggaatcatttgaaaacagagtgaac
caggtgttgaataaggcccgtgatgatgctggaagcagtgcacagaagagcttgtcggag
agtaacaatcttaaggctatggtaactgcaggatctaagggaagctttataaacatatca
caaatgactgcttgtgtggggcagcagaatgttgaaggtaaacgaattccttttggattc
atagaccggacattgccccacttcactaaagatgattatggtccagagagtcgtggtttt
gtggagaactcgtatttaagagggttgacccctcaagagttcttcttccatgctatgggt
ggtagggaaggtctgatagatactgctgtgaaaacttctgagactggatacatacagagg
cgattggtaaaggccatggaggatatcatggttaagtatgatgggactgtcaggaactct
ttgggggatgttattcagtttctttacggggaagatggtatggattctgtctggattgaa
tcacagccattggaatctttgaagttaaagaaatcaaatttcaataacatgtatagatat
gagattgatgatccagattggaatcctagttacatgttgcctgaagctgtggaagatcta
aaaacaatccgtgaaattcgcagcgtgttcgatgcagaggttcagaaacttgaagtggat
agataccaacttgcgacggagattgcgacaacaggtgacaactcttggcctctgcctgta
aatatcaagaggcttgtgttaaatgcacaaaagacctttaaagttgactttagaaggcct
tctgatatgcacccaatggagatcgtggaagctgttgataagctgcaagaaaggcttaag
gtggttgtcggtgatgattacctgagtatggaagctcagaagaatgccacactttttttc
aatatattattgcgcagtgctttggctagtaagagagttttaaaggaatacagacttact
cgtgaagcttttgactgggttattggtgagatagaatctcgcttcttgcagtcacttgta
gcatctggggaaatgattggttgtgttgctgcgcaatcaattggtgagcctgcgactcaa
atgactcttaatacttttcactatgctggtgtgagtgccaaaaatgttactctaggtgtt
ccgcggttgagggagattattaacgttgctaagaaaataaaaacaccatcgctgtctgta
tacttgaagcctgaagtaggtaaaacaaaggagagggccaaaaatgtccagtgtgctcta
gaatacacaactttacggagtgttacacaagctacagaagtatggtatgaccctgatccc
atgagcaccattattgaggaagacgttgaatttgtgaagtcctattatgagatgcctgat
gaagagattgaccctgacaagatctctccctggttgcttcgaatagaattaaatcgagag
atgatggtagataagaagctcagcatggcagacatagcagaaaagattaatcttgaattc
gatgacgatctcacgtgcatatttaatgatgataatgctgagaaactgatcctccgtatt
cgtattatgaatgatgaagctcctaagggtgagctgcaggatgaatcagccgaggatgat
gtgttcctcaaaaagattgaaagtaacatgttaacagaaatggctctccgaggcattcca
gatattaataaggtgttcataaaaaacagtaaactaaataaatttgatgaaactgaagga
tttaaggcagagaatgagtggatgttggatactgaaggtgttaatcttttggctgtcata
tgtcacgaagatgttgatgcgaggaggaccacaagtaatcacttaattgaagttatcgaa
gttcttggaattgaggcagttcgaaaagccttactggatgagctgcgtgttgtcatatct
tttgatggatcttatgtaaattaccggcatttggcaatattgtgtgataccatgacatat
cgtggtcatttgatggccatcacccgtcacgggattaatcgcaatgatactgggcccatg
atgagatgctcgtttgaagaaactgttgacattctacttgatgccgctgtctttgctgaa
acagattacctgaggggtgtcactgaaaatataatgttaggtcagcttgcaccaattggc
acaggagactgctccttgttgctgaatgaggagatgttgaaacaagccattgagatccct
ctcccgagctacatggaagggggcatggattttggcatgactcctgcccgttcaccacat
tctggaacaccatatcacgatggcatgatgtctccaagttatctactgagtccaaatctg
cggttatctcctgttacagatgctcaattttctccttacgctggtggaatggctttttca
ccgacatcgtctccaggctacagcccatcatctcctggatacagtccatcctcccctgga
tatagccccacctcccccggttatagccccacttcccctggttatagtcccacttccccg
acctatagccctagttctcctggatatagcccaacaagtcctgcatattctcctacaagt
ccatcgtattcaccaacttctcccagttacagcccaacatcacctagttacagcccaacg
tcgccaagttacagccctacatctccaagttacagccctacttctcctgcgtacagccca
acttccccagcatacagcccgacttctcctgcgtacagcccgacttctccgtcatacagt
ccgacttctccatcgtatagtccaacttctccatcgtacagccccacctctccgtcatac
agtccaacttctccatcatacagccccacctcacctgcatatagcccaacctctcctgga
tatagccccacctcccccagttacagccctacctctccaagttacagccctacatcaccg
agttacaatcctacatcaccgagttacaatccctcagccagatacagcccttccctagca
tactcgcctactagtccaaagatcacaccttctagtccgtacagtccctcatctccaagt
tacagcccgacatcgccttcatactctcccacatctccgacgtattctccttctagtcca
acatatagtccaagcagcccatataactccggggcaagtccggactatactcctagttct
ccaccatacagtccaagtggaggatactcacctagtgcacctgggtattccccgtctaca
accagccaatacagtccccgtgttagtgagagagacgacaaaagtgttcggaatgataag
ggtcgctga
DBGET
integrated database retrieval system
