Olea europaea var. sylvestris (wild olive): 111398986
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Entry
111398986 CDS
T05244
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
oeu
Olea europaea var. sylvestris (wild olive)
Pathway
oeu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oeu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111398986
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oeu03019
]
111398986
03012 Translation factors [BR:
oeu03012
]
111398986
Enzymes [BR:
oeu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111398986
Messenger RNA biogenesis [BR:
oeu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111398986
Translation factors [BR:
oeu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
111398986
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
nSTAND3
NACHT
ATPase
AAA_11
PhoH
T2SSE
ABC_tran
Motif
Other DBs
NCBI-GeneID:
111398986
NCBI-ProteinID:
XP_022881945
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All DBs
Position
8:16396079..16416616
Genome browser
AA seq
1178 aa
AA seq
DB search
MKDRPPPSPSRGALYVPPHHRLCSVITTPSSTSSPTKDSVPTTLSTNNTTRNQSSSLHSI
VNKSNDNNKNTGNPYPYLPPHQYKQQAQAKKSLHYKVSEEISYRDIEFLTHQDASTLDDV
DGWKWKLTTLLDNKDKQELVSRDKRDRRNYDQISALASRMGLYSHLYTKVVVVSKVPLPN
YRFDLDEKRPQREVILPPRLQRRVEIHLGQYISQKPKGMDAFSRSSSNCSIATNEWLFEQ
PELLTPGEVSMEKIIWRKSQQMQEEQLIWQQSTEGREMMEFRSSLPAYKERDAILSAISQ
NQVVIISGETGCGKTTQIPQFILESEINSIRGAMCSIICTQPRRISAMSISERISAERGE
KLGDTVGYKVRLEGMKGRDTHLLFCTTGILLRRLLADRNLKGVTHVIVDEIHERGMNEDF
LLIILKDLLPRRPELRLILMSATLDAELFSSYFGGAPMVHIPGFTYPVRTHFLENILERT
GYQLTPYNQIDDYGMEKMWKMSKQAPRKRKSQLVSAVEEALKAADFKDYSAQTQQSLSCW
NPDCLGFNLIECLLCYICENERPGAVLVFLTGWEDISSLKDKLQGHLLVGDTSRVLLLAC
HGSMASEEQKLIFNKPEDGIRKIVLATNIAETSITINDVVFVIDCGKAKETSYDALNNTP
CLLPSWISKVSARQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPEILRTPLQSICLQIK
SLKLGSISEFLSRALQSPEYLAVQNAIEYLKIIGALDETENLTVLGRYLTILPMEPKHGK
MLILGAILNCLDPVLSVVAALSVRDPFLTPMDKKDLAEAAKAQFSRDYSDHLALVRAFEG
WKVADRDLAGYEYCWKNFLSVQSMKAIDSLREEFYSLLKDIGLVDSNPTIFNTWSYDEHL
LRAIICYGLYPGICSVVHNEKTSLLKTMEDGQVLLYYNSVNARDSRIPYPWLVFNEKIKV
NSVFLRDSTAVSDSVLVLFGGGISEGVMDGHLKMLGGYLEFYMEPATAKLYQSLKRELEE
FIQTKLLHPWMDIHSYHELLSAIRLLISDDQCGGRFVYNRLIEQTSKPSIVSEAPIFIPR
LQSGPGGDNSKSQLQTLLTRAGHGAPAYKTKQLKNNQFQSTVEFNGMQIMGQPFNNKKQA
EKDAAAEALQWILGRNQAGHDHVDHMSMLLKKSKKDHK
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacaggccgccgccgtcgccgtcacgcggcgcactttacgtgccgccacatcac
cgcctctgctccgtcatcactacaccgtcttccacctcctcccccactaaggattccgtg
cctaccactttaagtactaataatactactcgcaatcagagctcatctcttcattccata
gttaataagagtaatgataacaataagaatactggcaatccttacccgtacttgccacct
catcaatataagcagcaggcacaggcgaaaaaatcgctgcattataaggtgtcagaggaa
atttcctatcgtgacatcgagtttctgacacatcaagatgcttccaccttggatgacgtt
gatggctggaaatggaagttaactactcttttagacaataaggataagcaagaactagta
tcaagagataaaagggataggcgcaattatgatcaaatatcagctttagcgagcagaatg
ggtttatacagccacctgtatacaaaagtggtagttgtcagtaaggttcctttgcccaac
tatcggtttgatctcgatgaaaagcgtccacagagggaggtgatcttgcctccacgtttg
caaaggcgagtggaaatccatcttggacaatacatttcccaaaagcccaagggcatggat
gcattttcaagatcaagcagtaattgcagtattgctaccaatgaatggctttttgagcaa
cctgagctgcttacacctggcgaggtttccatggagaaaattatttggcgaaaaagtcag
caaatgcaagaggagcaactgatttggcagcaatctactgaaggcagagagatgatggaa
tttcgtagtagtctgcctgcttataaggagagagatgcaatattaagtgccatttcgcag
aaccaggttgtaatcatctctggtgaaactggttgtggaaagaccactcagattccccag
tttattctggagtctgagattaactcaattcgtggagcaatgtgcagtatcatatgtact
cagcccagaaggatatctgcaatgtctatatcagagaggatttccgctgagagaggggag
aaattgggagatacagttggatataaggttcggttagagggtatgaaaggaagggatacc
cacctcctcttctgcacaacaggcattttgctgagaagattactagctgatagaaacttg
aagggtgtaacgcatgttatcgtcgatgagatacatgaacgtggaatgaatgaagatttt
ctgcttattattttgaaagatctactaccccgccggccagaactaaggctaattctcatg
agtgcaaccttagatgcagagctcttctcatcatattttggtggggctccaatggtccac
atcccgggtttcacttatccagtacgtactcattttctagaaaatattttggaaaggaca
ggataccaattgacaccatataatcaaattgatgattatggtatggagaagatgtggaaa
atgagtaaacaagctccaagaaagagaaaaagccagcttgtttctgctgttgaggaggca
cttaaagctgctgatttcaaggattatagtgctcagactcagcaatctttgtcttgctgg
aatcctgattgtctaggtttcaatctcatagaatgtcttctgtgctatatatgcgagaat
gaaaggcctggtgctgttttagtttttctgactgggtgggaggatataagctccttgaag
gataagctgcaaggtcatcttctagtaggagatactagtcgcgttttattgctggcatgc
catggttccatggccagtgaggagcagaaattaatatttaacaagcctgaagatggaata
aggaagatcgttctagctacaaatattgctgaaaccagtatcactattaatgacgtggtt
tttgttattgactgtgggaaggcaaaagagacgtcttatgatgcgctaaacaatactcct
tgtctgcttccttcttggatttcaaaggtttcagctcgacaaagaagaggaagagctgga
cgtgttcagccaggagaatgctatcatctctatccaagatgtgtatatgatgcttttgca
gattatcagttaccagaaattttaaggaccccactgcagtctatttgtttacaaattaaa
agtctgaaactgggtagtatttctgagttcctgtctagggcactgcagtcgccggagtat
ctagcggttcaaaatgctattgaatatttaaagatcattggggctttggatgaaactgaa
aatttgactgttttaggacgctacttaacaatccttccaatggagccaaaacatggcaaa
atgcttatacttggcgctatattgaattgcctggacccagtgttaagtgttgttgctgct
ctaagtgtccgtgatcctttcttaaccccaatggacaagaaggatttagcagaagctgca
aaagctcaattttcacgtgattatagtgaccaccttgctcttgttcgggcttttgagggt
tggaaagttgctgatagagatcttgctggatatgaatattgctggaagaatttcctgtca
gtacagtccatgaaagctattgattctctacgtgaggaattctactctctgctgaaggat
attggccttgttgatagcaacccaaccattttcaacacatggagctatgatgagcatctt
cttcgagctattatttgctatggattgtatcctggaatctgctctgttgtgcacaatgag
aaaacctccttacttaaaacgatggaagacgggcaggtgcttttgtactataactcggtc
aatgcacgtgactcaaggataccatatccatggcttgtttttaatgaaaagatcaaagtt
aactctgtcttcctgcgggattcaacagctgtgtctgattcagtgctggtcctatttggc
ggaggcatctcagaaggagttatggacggtcacttaaaaatgttgggtggatatttggag
ttttatatggaacctgctacagcaaaactgtatcagagtttgaagagagagcttgaggaa
tttattcaaacaaaactcctccatccgtggatggatatacattcctaccatgaactttta
tctgcaatacggctgctgatctcagatgatcaatgtggcggtagatttgtttacaaccgc
ctgatagaacaaacctccaagccatctattgtatcagaagctccaatcttcatacctagg
ttacaaagcggtccggggggtgataattcaaagagtcagctacaaacattgctgacccga
gcaggccatggagcaccagcatacaagacgaagcagctaaagaacaatcagttccaatca
actgtagaattcaacggtatgcagataatggggcagccatttaacaacaagaagcaagca
gaaaaagatgctgcagctgaggcactgcagtggattttgggacggaatcaagcaggccat
gaccacgttgaccacatgtcaatgttgctgaaaaagagcaagaaggaccacaagtag
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