Olea europaea var. sylvestris (wild olive): 111402078
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Entry
111402078 CDS
T05244
Name
(RefSeq) sm-like protein LSM2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
oeu
Olea europaea var. sylvestris (wild olive)
Pathway
oeu03018
RNA degradation
oeu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oeu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111402078
09123 Folding, sorting and degradation
03018 RNA degradation
111402078
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oeu03019
]
111402078
03041 Spliceosome [BR:
oeu03041
]
111402078
Messenger RNA biogenesis [BR:
oeu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111402078
mRNA degradation factors
5'-3' decay
Lsm complex
111402078
Spliceosome [BR:
oeu03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
111402078
Complex C
U2 snRNP components
111402078
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM14
Motif
Other DBs
NCBI-GeneID:
111402078
NCBI-ProteinID:
XP_022885900
LinkDB
All DBs
Position
1:33574761..33577765
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AA seq
93 aa
AA seq
DB search
MLFFSYFKDLVGREVTVELKNDLALSGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPPEGVDVELLHDATRREARGG
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgctgttcttctcgtacttcaaggatctggtgggtcgagaagtgactgtggagctgaag
aacgatttggcgttaagtggtactttacactctgtggatcagtacctcaacattaagctc
gaaaacacgcgggttgttgatcaagacaagtacccccacatgctttcagtgaggaattgc
ttcatcagaggatcagtggtgaggtacgtccaattgccaccagagggagttgatgttgaa
ttgcttcatgatgccacaagaagagaagccaggggtggctaa
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