Olea europaea var. sylvestris (wild olive): 111402456
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Entry
111402456 CDS
T05244
Name
(RefSeq) probable RNA polymerase II transcription factor B subunit 1-1 isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
oeu
Olea europaea var. sylvestris (wild olive)
Pathway
oeu03022
Basal transcription factors
oeu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oeu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111402456
09124 Replication and repair
03420 Nucleotide excision repair
111402456
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oeu03021
]
111402456
03400 DNA repair and recombination proteins [BR:
oeu03400
]
111402456
Transcription machinery [BR:
oeu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
111402456
DNA repair and recombination proteins [BR:
oeu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
111402456
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
DUF5793
GRAM
SHOCT
Motif
Other DBs
NCBI-GeneID:
111402456
NCBI-ProteinID:
XP_022886540
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Position
10:complement(44300510..44312715)
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AA seq
544 aa
AA seq
DB search
MADGQVMKRAKYKSSVKDPGVPGVLKMTRERFVFMPNDPNSSRKLNVEFRTIKGHKFTKE
GSSGQALLNLTQEHGGNYILEFDSFADRDIFREFVAAAIAFHGETGKATSEKPAAPLQGE
QLSTAEMEYRIKLLQEDNELQMLHKQFVIGGILTEAEFWATRKKLLDQNDRRMPKQHVAL
KNEMWSVKPLSDGQSNRVTFNLTPEIILQIFAEKPAVRQAYLKCVPIKMSEKEFWTKYSR
AEYLHSTKNVVAAAAEAAEDEELAIFLKQDDMLANEARRKIRRVDPTLDMEADVGDDYLH
LLDHGLLREESKDVLDSQYEPYRRYFSQDLNQHAAVVLQGRVVDVELGDTRSVAEALART
KQAELANEASEGNSEIDLSHRISRIAEMDDLQGPRDPAVAHLCIKDPGDYFDSQQANALK
ALGDTGSGLKTLKCNVSPLEAYGSLRELVSEIRVRGLSEPITNPEVAFTVLSGLTQNISS
TKYHLGKNPHESVLDSLPKVTREDLLHVSAHKYLHWTSIQELLKHFWSSYPITTKYLYTK
VTRL
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgggcaggtgatgaagcgtgccaagtataagtcttcggtcaaggaccccgga
gttcctggcgtcctcaaaatgaccagggaaagatttgttttcatgccaaatgatccaaat
tcgtccagaaagttaaatgttgagtttaggacgattaaagggcataaatttaccaaggag
ggttccagtgggcaggcccttcttaatcttactcaagaacatggtggaaattacatatta
gagtttgatagttttgctgatcgtgatattttccgagaatttgtggctgcagctattgcc
tttcatggtgaaacagggaaagctacctctgagaagcctgctgctccacttcagggcgag
cagcttagcacggcagaaatggagtatcggataaagctactgcaggaggacaacgaattg
cagatgcttcataaacaatttgttattggaggtatcttgacagaggctgaattttgggcc
acaaggaagaaattactggatcagaatgacagaagaatgccaaagcagcatgtggcctta
aaaaatgaaatgtggagtgtgaaacccttatcggatggtcagtctaacagagttacattc
aacttgactccagagattattcttcagatatttgctgagaaaccggctgttcgccaagca
tatttgaagtgtgttcctatcaagatgtcagaaaaggaattctggaccaaatattcaaga
gcggaatatcttcacagtaccaaaaatgtagttgccgctgcagctgaggctgctgaagat
gaggagcttgccatttttctgaagcaagatgacatgttggcaaatgaagctcgtagaaag
atcaggcgtgttgatcccactttggacatggaagctgatgtaggcgatgactacttgcat
ctcctggatcatgggttacttcgtgaagagagcaaggatgttttagactcgcaatatgag
ccatacagaagatatttctcgcaagatctcaaccagcatgctgcagttgttcttcaagga
agagttgtagatgttgagcttggagacacaaggtctgtggctgaagcacttgctcgtaca
aaacaagctgagttggcaaatgaagcatctgaagggaattcagaaatagatctctcacac
aggatctctcgaattgccgagatggatgatcttcaggggcctcgagaccctgcagttgct
cacctctgtattaaggatcctggggactacttcgattctcagcaagctaatgcattaaag
gcgttaggagatactggttctggtctgaagacattaaaatgtaatgtaagcccacttgaa
gcctatggttctttaagggaacttgtatctgagattagagtcagggggttgagtgaacca
atcacaaatccagaagttgcttttacggttctcagtggcttgacccagaatatatcgagc
accaaataccatcttggaaagaacccacatgagagcgtattggatagtttgccaaaagtt
actagagaggatctcttacatgtgagtgcacacaaatacttgcattggacgtctatccag
gaattattgaaacatttctggtcatcatatccaattacaacaaagtatctttatacaaag
gtaaccagattgtaa
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