Olea europaea var. sylvestris (wild olive): 111403315
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Entry
111403315 CDS
T05244
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
oeu
Olea europaea var. sylvestris (wild olive)
Pathway
oeu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oeu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111403315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oeu03041
]
111403315
Enzymes [BR:
oeu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111403315
Spliceosome [BR:
oeu03041
]
Complex C
Other components
Step II factors
111403315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
WHD_HA2
AAA_22
AAA_19
T2SSE
nSTAND3
PhageP22-tail
nSTAND_NTPase5
AAA_30
AAA_7
CoV_NSP2_N
Motif
Other DBs
NCBI-GeneID:
111403315
NCBI-ProteinID:
XP_022887535
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All DBs
Position
11:10111201..10121456
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AA seq
708 aa
AA seq
DB search
MPSMDSGNFKQSQHNSNINKPKSEHFARRQNIEQQRKALPIAAVEKLLLEEVRNNDTLII
VGETGSGKTTQLPQYLNNGGFCRDGGIIGITQPRRVAAVTVAKRVAEECGVALGQKVGYA
IRFEDVTSSSTRIKYMTDGLLLREALLDSYLSKYSVIIVDEAHERTVHTDVLLGLLKTVQ
KTRSKGVSDAVKNGMPLEKHNGSKVFSTLKQCRGKKLSPLKIIIMSASLDARVFSEYFGG
ARAVHVQGRQYPVDILYTRQPETDYVDATLITIFQIHMEEGPGDILVFLTGQEEIESAER
LVHERLPQLSESKRKLLTFPIFSSLPSEKQMKVFMPTPIGFRKVILATNIAETSVTIPGI
KYVIDPGMVKVRTYEASTGIEPLIIVKTSKAQAVQRSGRAGREGPGKCYRLYPESEFDKL
KDSTTPEIKRCNLSNVILHLKALGVDDIIGFDFIEQPDRIAIIKSMELLFLLGALTDESK
LSDPVGQRMARLPLDPIYSKALIIASEFNCLEEMLIVVAMLSVESIFYAPREKLEESRIA
LKSFSSPEGDHLTLLNVYRASDEFLQKSNLVNSKEKAEKNLRKWCKENFINSRSLKHARD
IHSQIQRNAEQMNLHVTSCGDDMLPFRRCLAASFFLNAALKQPDGTYRALSSGLTVQIHP
SSVLFRTKPECIIFDELVRTNHNYIRNISRIDYLWLAELAPQCYALQE
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgccttcaatggattctggtaacttcaagcagagccaacacaattctaatatcaataaa
cccaaatcagagcactttgccaggaggcagaatattgaacagcagagaaaagctctgcca
attgctgctgttgaaaaattacttttggaggaggttaggaataatgacacactgataatt
gttggtgaaactggcagcgggaagacaacacaattgccccagtatcttaataacggaggt
ttctgtcgcgatggtgggataattgggataactcagcctagacgtgttgctgctgtcact
gttgcaaaacgggttgctgaagaatgtggagttgcgttgggccaaaaagttggatatgcc
attagatttgaggatgtgacttccagctcaacaaggatcaaatatatgacagacggattg
ctattaagggaagcattacttgattcgtacctctccaagtattctgttattatcgttgat
gaggctcatgagagaactgtccacactgatgtattgcttggcttgttgaagactgtacaa
aagacgaggtcgaaaggtgtaagtgatgcagtcaagaatggcatgccgttggaaaaacat
aatggttccaaagttttcagtactcttaagcagtgccgaggcaagaaattgtctcctctg
aagattattataatgtctgccagtctagatgcacgggttttttccgagtactttggtggt
gctagagctgtgcatgtgcagggtagacagtaccctgttgacatactctatactcgtcaa
cctgagactgattatgtagatgcaactttgattaccatatttcagatacatatggaggaa
ggtcctggcgatatacttgtgttcttgactggccaagaagaaatagaatctgcggaaagg
cttgtccatgagcgccttccgcaattgtctgaaagcaaacggaagcttttgacctttcca
atattttcatctcttccatcagagaaacaaatgaaagttttcatgcctaccccaattggg
tttcgaaaggtaatattagccaccaatattgctgagacgtcagtaacaataccaggaatc
aagtatgtcattgaccctggaatggtgaaagtacgcacgtacgaggcatctacagggatt
gaaccattaatcatcgtcaaaacttcaaaagcacaagcagttcagaggagtggacgtgca
ggccgtgaaggacctgggaaatgctaccgtctttacccagagagtgaatttgataagctc
aaggattccacgacacctgaaattaaaagatgtaacctatcaaatgttattttgcatctt
aaagctctaggcgttgatgatattattggctttgacttcattgaacaaccagacaggatt
gctatcatcaagtcgatggagttgttattcttgttaggtgctctgacggatgaaagtaaa
ttgtctgatccagtggggcaaaggatggccaggcttccactggatcctatttattccaag
gctctcattattgccagtgaatttaactgcttggaagaaatgttaatagttgttgcaatg
ctctctgtggaatctatcttttatgctccccgtgaaaagttagaagagtctcgaattgct
ttaaaaagcttctcaagtccagagggggatcatttgactttgctgaatgtatatcgtgct
tctgacgagttcttgcagaagagcaacttagtgaacagtaaagaaaaagccgaaaaaaat
ctcagaaaatggtgcaaggaaaattttatcaatagccgatccctcaagcatgctcgtgac
atccacagtcaaatacagaggaatgcggaacaaatgaatctccatgtcacttcatgtgga
gacgacatgcttccttttcgcagatgccttgctgcttccttttttcttaatgcagctttg
aagcagcctgatggtacatacagggctttgtcaagtggtcttacagtgcaaatccatccg
tcatctgttttattccggacgaaacctgagtgcattatctttgatgaattagttcgaact
aatcataattatattcgaaacatttctagaatagattacttgtggttagctgagctggct
cctcaatgttatgccctgcaggaatag
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