Olea europaea var. sylvestris (wild olive): 111405466
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Entry
111405466 CDS
T05244
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
oeu
Olea europaea var. sylvestris (wild olive)
Pathway
oeu03013
Nucleocytoplasmic transport
oeu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oeu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111405466
03015 mRNA surveillance pathway
111405466
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oeu03019
]
111405466
Messenger RNA biogenesis [BR:
oeu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111405466
mRNA cycle factors
P-body specific factors
111405466
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
111405466
NCBI-ProteinID:
XP_022890132
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All DBs
Position
12:7910983..7926300
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AA seq
1184 aa
AA seq
DB search
MEHSEDIGGEHREKHDDEEAVARLEEFKKSVEAKMVLRQSNLNPERPDSGFLRTLDSSIK
RNTAVIKKLKQITEEQREGLMDELRGVNLSKFVSEAVTSICDAKLKTADIQAAVQICSLI
HQRYKDFSSSLVQGLLKIFLPGKSTEDLDGDKNSKAMKKRSTLKLLLELYFVGVVEDSSL
FTNIIKDLTSTEHFKDRDATQTNLSLLASFARQGRYLLGLPLTGQDTLEEFFQGLNITAE
QKKFFRKAFLTYYDAAVELLQAEHASLRQMEHDNAKILNAKGELSEENASSYEKLRKSYD
QLYRGISSLAEALDMQPPVMPEDGHTTRVTSGEDVSSPGVGKDTSSLEALWDDEDTRAFY
ECLPDLRAFVPAVLLGEAEPKLNEQSPKTQEQPSDLTAESDKGQVATQDTAEVSSDSGAL
QEDKDGKGKDKEEKDKERTKEPDKEKGKENDAERRGENEKDKVKGLEGTNLDALLQRLPS
CVSRDLIDQLTVEFCYLNSKANRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDICS
MLLQLLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKIASAGLVFSCLKACLDDFTHH
NIDVACNLLETCGRFLYRSPETTLRMSNMLEILMRLKNVKNLDPRQSTLVENAYYLCKPP
ERSARVSKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPWTECEPYILKCFLKVHKGK
YGQIHLIASLTAGLSRYHDDFAVAVVDEVLEEIRLGLELNDYGMQQQRIAHMRFLGELYN
YELVDSSVIFDTLYLILVFSHGTAEQDILDPPEDCFRIRMVVTLLETCGHYFDRGSSKRK
LDRFLVHFQRYILSKGALPLDIEFDLQDLFAELRPNMIRYLSIEEVNAALIELEEHELRV
SSEKAHNDKHSDAEKHRRRTSSGALSVNGQILANGMEENVELHEEFAGETDSESGSGTEH
VDNDEESDEDNDGESDDDYEDGGEPASDEDDEVHVRQNVAEVDPQEVADFDRELRALMQE
SLDSRKLELRSRPTLNMMIPINVFEGATKEHHGRGVEGESGDDTTDEGTGGTKEVRVKVL
VKRGNKQQTKQMQVPRDWVLVQSTKQKEAAELEEKQDIKRRVLEYNDREEEELSGGTQPS
GWTPSGGGRVVNRGHTWEGHGRASGSRHRNLYHSGGGHYYGRRK
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atggaacactctgaggatattggaggtgaacatcgggagaaacacgatgatgaggaagct
gttgctcgtcttgaggaatttaagaagtccgttgaagcaaaaatggtcctgcgacagagt
aatttgaaccctgaaaggcctgactcaggttttctcaggacattggattctagcattaag
cgcaacacggctgttattaaaaaactaaagcaaataactgaggagcagcgagaaggtttg
atggatgagttacgtggtgtcaacctaagcaaatttgttagtgaagcagtaacttcaatt
tgtgatgcgaagcttaagactgcagacatacaagctgctgttcagatctgctctttaatt
catcaaaggtacaaagacttttcttctagtctggttcaaggtctcttgaaaattttctta
cctggaaagtccaccgaggacttagatggagacaaaaattcaaaggccatgaagaaacgg
agcacactaaaacttctattggaactttactttgttggtgttgtagaagatagcagcctc
tttacaaatattattaaggatctcactagcacggaacattttaaggatcgtgatgcaacc
cagacaaatttatcccttcttgctagttttgctcgacaaggaagatatcttcttggactg
cctctgactggacaagatacgctggaagagtttttccagggacttaatattacagccgaa
cagaaaaaattctttagaaaggcatttctaacctactatgatgctgctgtagaactactt
caggcagaacatgcatctctccgccaaatggagcatgataatgcgaagattttaaatgct
aaaggtgaactgagtgaagaaaacgcctcttcatatgaaaagctgagaaaatcttatgac
caactgtatcgtggtatctcttcattagcagaagcacttgacatgcaacctcctgtgatg
cctgaggatggtcatacaaccagggtcacgtcaggggaggatgtttcgtctcctggtgta
ggcaaagatacttcttctctggaagccttgtgggatgacgaagatactagagctttctat
gagtgcctgccagatctcagagcattcgttccagctgtattgttgggagaggcagaacca
aagttgaacgagcaatctccaaagactcaagaacaacctagtgatctgactgctgaatca
gataaaggtcaggtagctactcaagatactgcagaggtttcttctgattctggagcttta
caggaggataaagatggcaaagggaaggataaagaagaaaaagacaaagaaaggaccaaa
gaacctgacaaagagaagggaaaagaaaatgatgctgaaagaagaggagaaaatgaaaag
gataaagttaaaggtcttgaaggaacaaatcttgatgctttgctacagagacttccaagc
tgtgtgagccgtgacttgattgatcagttgactgtagagttttgctatttaaactcgaag
gccaataggaaaaagcttgtgagggctttgttcaatgttcctaggacatctcttgagcta
ttgccgtactattcacgaatggtcgccacactgtcaacttgtatgaaggatatctgttcc
atgcttttacagttgttggaggaagagttcaactttttaataaataagaaggatcaaatg
aacatcgaaacgaagatcaggaatatacgttttattggagaactttgcaagtttaaaatt
gcatcagcaggccttgttttcagttgtctaaaggcttgtttagatgattttactcatcat
aatattgatgttgcttgcaatcttcttgagacatgcggtcgcttcctctatcggtctcct
gagactactttacgcatgtctaacatgttagagatattgatgcgcttgaaaaatgtcaaa
aatttggatcctcgtcagagcactttagtggagaatgcttattacttgtgcaaaccacca
gaaagatccgcccgggtctctaaagttcgtcctccactgcatcagtacattaggaaactt
cttttttcggatcttgataagtctacgattgagcacgtgctgagacagttacgtaaacta
ccttggactgaatgtgaaccgtacattttgaagtgtttcttgaaggttcataagggaaaa
tatggtcagattcatttgattgcatccctcactgctggtttgagtcgctatcatgatgac
tttgctgttgctgttgttgatgaggttttggaagaaatcaggctaggattagagttgaat
gactatggtatgcagcaacaacggattgcccacatgcgtttcttgggggaattatacaac
tatgagcttgtcgactcatctgttatttttgatacactctatttgattctcgtttttagc
catggtactgcagagcaagatatattggatccaccagaagactgtttccgcatcaggatg
gttgtcacacttcttgagacttgtgggcattattttgatagaggttcgtcaaagaggaaa
cttgatcgttttttagtacatttccagaggtacatattaagcaaaggtgcactgcccctg
gatattgagtttgacttgcaggatttatttgctgaattacgccccaacatgattcgatat
ttatcaattgaagaagttaatgctgcactaattgaacttgaagaacatgagcttagagtt
tcatctgagaaggctcacaatgataagcattcagatgcagaaaagcatcgtagaaggact
tcatctggcgctttatctgtgaatggacaaatccttgcaaatggcatggaggaaaatgtt
gaattgcatgaagagtttgcaggggagactgatagtgaatctgggagtggcactgagcac
gttgataatgacgaagagtcagatgaagataatgatggtgaaagtgatgatgactatgaa
gatggaggtgaaccagcttctgatgaggatgatgaagtgcatgtcaggcagaacgtggca
gaagtggaccctcaggaggtagctgattttgaccgagaacttcgtgctctaatgcaggag
agcttggattcccgaaaattggagctgcgatcacgacctacattaaacatgatgatacca
ataaatgtgtttgagggcgccaccaaggagcatcatgggagaggggttgaaggagaaagt
ggtgatgacactacagatgaagggactggaggaacaaaggaggttagggtaaaggtcctt
gtgaagcgggggaacaaacaacaaacaaagcaaatgcaagttcctcgggattgggtcctg
gtacagagcacaaagcagaaagaagcggctgagcttgaagaaaaacaagatatcaaaagg
cgtgtcctagaatacaatgatagagaagaggaggaactcagtggagggacccaaccatct
gggtggacaccgagtggtggaggtagagttgtgaaccgcggccacacatgggaagggcat
ggtcgagcttctggatcgcgtcatcggaatttatatcattctggtggtgggcattattac
ggtagaagaaagtga
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