Olea europaea var. sylvestris (wild olive): 111405729
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Entry
111405729 CDS
T05244
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24-like
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
oeu
Olea europaea var. sylvestris (wild olive)
Pathway
oeu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oeu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111405729
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oeu03041
]
111405729
Enzymes [BR:
oeu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111405729
Spliceosome [BR:
oeu03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
111405729
Complex B
111405729
Complex C
U2 SnRNP specific factors
111405729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
UBA_HOIP
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
111405729
NCBI-ProteinID:
XP_022890518
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All DBs
Position
12:complement(13316175..13326941)
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AA seq
770 aa
AA seq
DB search
MSKRKFGFEGFGMNRQASYNFERSSAPQRLYVPPSSRSSGGSYDNYEDTDLDNIEYADDR
ENDSINGAGGGDEIDPLDAFMEGIHEEMNAAPLPKAKEKLDKYKDDEDEEDPMESFLRAK
KDVGLQLAAEVLHAGYNSDEEVYAAAKAVDAGMLEYDSDDNPIVLDKKKIEPILALDHSL
IDYEPFNKDFYEEKPSISGMSEPDVTEYKKSLAIHVSGFDFPRPVKTFEDCGFSVELMKA
IAKQAYERPTPIQCQALPIVLSGRDVIGIAKTGSGKTASFVLPMIVHIMDQPELGKEEGP
IGVICAPTRELAHQIYLEAKKFAKASGIRVSAVYGGMSKLDQFKELKAGCEIVVATPGRL
IDMIKMKALTMLRATYLVLDEADRMFDLGFEPQVRSVVGQIRPDRQTLLFSATMPRKVEK
LAREILTDPVRITVGEVGMANEDITQVVQVIPSDAEKLPWLLEKLPVLIDEGDVLVFASK
KNTVDEVESQLSQRGLRVAALHGDKDQASRMEILQKFKSGTYHVLIATDVAARGLDIKSI
KSVVNFDIAKDMDMHVHRIGRTGRAGDKDGTAYTLITEKEARFAGELVNSLIAAGQNATM
ELMDLAMKDGRFRSKRDARKGGGKRAKGRGGGGNRGVRGVDFGLGIGYSPESNAASNTVP
SRSATAVNSLRTGMMAKFKSNFVAASSNSQNQVVNHNPGMLANKRMALPGFVSGGTIGGD
VHTTDKTSSTGTASVSIIATQNSRDNANQKHSESSRERPRERRRPSGWDQ
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaacgaaaattcggtttcgaagggttcggcatgaatcgccaagcttcgtacaac
ttcgagcgatcctcagctcctcaacggctttacgttcctccgtcgtctcgctcctctggt
ggcagctacgacaattacgaagatactgaccttgacaacattgagtacgccgacgaccgt
gaaaacgactccattaatggtgccggtggtggtgatgagattgatcctctggatgcgttt
atggagggtatacacgaggagatgaacgcggcgccgctaccgaaggcaaaggagaagttg
gataagtataaagacgacgaagatgaggaggatccgatggagagttttttgagagctaag
aaggatgtaggtttacaattggctgctgaggttcttcacgcggggtataattctgatgag
gaggtgtacgccgcagctaaggcggtggatgctggaatgctcgagtacgattctgatgat
aatccgattgttttggataagaagaagattgagcctatcctggctctcgatcacagcttg
attgattacgagccctttaacaaggacttctacgaggaaaagccttccatttctggtatg
agtgagccggatgttactgagtacaagaagagcttggccattcatgtgtcgggttttgat
tttccaagacctgttaagacttttgaagactgtggtttctctgtggagctaatgaaagcc
atagctaaacaagcatatgaaaggcccacgccaatacagtgccaagctctgcccattgtg
ctttcaggaagagatgtcattggaatagccaaaactggttcaggaaagactgcgtccttc
gtgcttcctatgattgtccatattatggatcaacctgagcttgggaaagaagaaggccca
attggagtaatatgtgcacctactagggaactagctcatcagatatatttagaagctaag
aaatttgcaaaggcaagtgggattcgtgtctctgcagtttatggtggaatgtctaaactt
gatcagttcaaggagctgaaggcaggatgtgagatagttgtcgctaccccagggaggttg
atagacatgataaaaatgaaggcattgacgatgttgagagctacgtacttagtacttgat
gaggctgatcgaatgtttgatcttggttttgagcctcaagttaggtctgttgttggtcaa
ataaggccagatcgacaaaccttactcttctcagctactatgccgcgcaaagttgaaaaa
cttgcaagggagatactgactgatcctgtaaggattaccgtgggagaagttggtatggcc
aatgaggatataacacaagttgttcaagtaattccatcagatgctgaaaaattgccatgg
ctccttgaaaagcttcctgtgttgatagatgaaggtgatgttctggtttttgcttcaaaa
aagaacacagtggacgaagtagaatcacagctttcacagaggggtttaagagttgctgct
ctgcatggtgacaaagatcaggcttctcgaatggagatattgcaaaaatttaaatctgga
acataccatgttctcattgcaactgatgttgctgctcgtggtcttgacatcaagtcaatt
aaatctgtggtcaattttgatatagcaaaagatatggacatgcatgtccatcgaattgga
aggacaggtcgtgctggtgacaaagacggaactgcatacactctcataacagagaaggag
gcacggtttgcaggtgaattagtcaacagtttgattgctgctggtcaaaacgcaactatg
gagctgatggatcttgccatgaaggatgggaggttcagatccaaacgtgatgcacggaaa
ggaggtgggaaaagagctaaagggaggggcggaggtggtaaccgaggtgtgcgaggcgtg
gattttggattgggtattgggtatagtccagaatccaatgcagcatcaaataccgttcca
agtcgttcggccaccgcagttaattcactgaggacagggatgatggcaaaatttaaaagc
aattttgttgctgcatcatcaaattcccaaaatcaggttgtgaaccataatccaggcatg
cttgccaataaaagaatggctttgccgggctttgtatctggaggcactataggtggagat
gttcatactaccgataaaaccagttcaactggtactgcttctgtgtcaatcattgccact
cagaattccagagataacgcgaaccaaaaacactcagaaagctccagagaaaggcctaga
gaaaggcggaggccctctggttgggatcagtaa
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