Olea europaea var. sylvestris (wild olive): 111405737
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Entry
111405737 CDS
T05244
Name
(RefSeq) DNA mismatch repair protein MSH6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
oeu
Olea europaea var. sylvestris (wild olive)
Pathway
oeu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oeu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
111405737
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oeu03400
]
111405737
DNA repair and recombination proteins [BR:
oeu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
111405737
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
LBR_tudor
Motif
Other DBs
NCBI-GeneID:
111405737
NCBI-ProteinID:
XP_022890527
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All DBs
Position
12:13427517..13436247
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AA seq
1305 aa
AA seq
DB search
MTPSKRTSNGKSPLVNQQRQITTFFAKKSPSESSSPTGPTPSPSLSKQNPKLNSNFNPSS
SPSLITPSPLQTKSKKPTMVIGSDLSSSPSTPVSTKRSCAEELVNKRIRVYWPMDNTWYE
GCVISFDRVSEKHLVRYDDDEQELLKLSDEKIEWINEPVKKFRRLRRVSVVDDEEETKTL
EGMESGGDDSEDEDWGKSVEKEVGEDEDSLEDMDLEEEDGGSGKSGVSKKVETRKRKLSA
GGKSELSANKKSSGDLKNSASKFSFGANEGELKRSTKHIADSGKVSIPDSGLVGDVAERF
GAREAEKLRFLGVDRKDAMKRRPSDVNYDPKTLYLPQDFLKSLSGGQRQWWEFKSKHMDK
VLFFKMGKFYELFEMDAHIGAKELDLQYMKGEQPHCGFPEKNFSVNVEKLAQKGYRVLVV
EQTETPDQLELRRREKGCKDKVVKREICAVVTKGTLMEGEMLSRNPDASYTMAVTENCQS
SENQQAAHIFGVCVVDVTTSKIVLGQFIDDSDCSSLCCLLSELRPVEIVKPAKLLSPETE
KVILRHTRNPLVNELLPLSEFWDAEKTICEVKAIYRLIGDKSCFSDLDEAIACASESLVK
NVGVDCLPSVLSELVNAGEDGSYALSALGGTLFYLKQAFLDETLLRFAKFELLPCSGFGE
ITQKPYMVLDAAAMENLEVFENGRNGDSSGTLYAQLNHCVTAFGKRLLRTWVARPLYHIE
SIKERQDAVAGLKGVNGPFVLEFRKELSRLPDMERLLARIFARSEANGRNATKVVLYEDA
AKKQLQEFISVLRGCELMIHACSSLDAILENTDSRLLHHLLTPGKGIPDVHSILRHFKDG
FDWEEANSSGRVIPVEGVDVEYDSSCQTIRDIETNLEKYLKEQRKLLGDASINYVTVGKD
AYLLEVPESLCHSISQEYELQASKKGFFRYWTPVIKNLVGKLSQAESEKESKLKTILQRL
IGKFCEHHNKWRQLISTISELDVLISLSIASEYYEGPTCRPIISPVSSPDEVPCLIANSL
GHPVLRSDTLGKGTFVANDVSLGGSSQANFILLTGPNMGGKSTLLRQVCLAVILAQIGAD
VPAERFELSPVDRIFVRMGAKDQIMVGHSTFLTELLETASMLSAATRNSLVTLDELGRGT
STSDGQAIAESVLEHFVRKVQCRGMFSTHYHRLAIDYQKYPKVALCHMACKVGKGVGGLE
EVTFLYRLTSGACPKSYGVNVARLAGLPDVVLHKATAKSQEFEGMYGKRSEDDSSILSLE
DEASVIIRNLIKFSANQGCSYSSEHMVLGSLNELQLRARMLLEQN
NT seq
3918 nt
NT seq
+upstream
nt +downstream
nt
atgactccatcgaaacgaaccagcaatggaaaatcgccattggttaatcaacagcggcag
ataaccacatttttcgccaagaagtcaccatccgaatcgtcttctcctactgggcctact
ccatctccatccctctcgaagcaaaaccctaaacttaattctaactttaaccctagttcc
agtccaagcttgatcactccatcaccacttcaaaccaaaagcaagaagcccacaatggtg
ataggttctgatttatcttcttctccttcaacacctgtatctactaagagatcgtgtgca
gaagagcttgttaacaaaagaatcagggtttattggccaatggataacacttggtacgaa
ggttgtgtgatatcgtttgatcgagtctcggagaagcatttggttcgatatgatgatgat
gagcaggaattgttgaaactatctgacgaaaagattgagtggattaatgaacctgtgaag
aagttccgtagactacgaagggtttcggtcgtagatgatgaagaggagactaaaactttg
gagggtatggagagtggtggggatgattcggaggatgaagattggggaaaaagtgtggaa
aaggaagtgggggaagacgaggattctttggaggatatggatttggaggaagaagatggt
ggaagtggaaaaagtggtgttagtaagaaggtggagacgaggaagcggaagttgagtgct
ggaggaaagtcggaattaagtgctaataaaaagagtagtggagacctgaaaaatagtgcg
tccaagttttcctttggtgcaaacgagggagaactgaagcgctctacaaaacatattgca
gatagtgggaaagtttccattcctgacagcggtctagttggtgatgtagcagaaagattt
ggtgcacgcgaagcagagaagttacggttccttggggtagaccgcaaggatgccatgaaa
agacgccccagtgatgtaaattatgacccaaaaactctttacttgcctcaagatttctta
aaaagcttatcaggggggcagaggcaatggtgggagtttaagtcgaagcatatggacaag
gttctgttttttaagatgggcaagttttatgaactttttgaaatggatgcacatattgga
gccaaagaacttgatttgcagtatatgaagggagagcaacctcactgtggatttcctgaa
aagaacttctcagtgaatgtagagaagctggctcaaaagggttaccgtgttcttgttgtg
gagcaaacagagacacctgatcagcttgaacttcgtcgcagagagaaaggttgcaaagat
aaggttgtgaaacgcgaaatttgtgcggtggtcacaaaagggactttgatggaaggggaa
atgctctcaagaaatcccgatgcttcttatacgatggcagtgacggaaaactgccaaagt
tcagaaaaccaacaagcagctcatatatttggtgtttgtgtggttgatgttactacgagc
aagattgttcttggacagtttatagatgattcagattgcagttccttgtgctgtctctta
tctgagctaagaccagtagagattgttaaacctgccaagctgctcagccctgagactgaa
aaagtaattctgaggcatacaagaaatcctttggttaatgagctgcttcccttgtctgaa
ttttgggatgctgagaaaactatttgtgaagtgaaggctatctaccggcttattggtgac
aaatcatgtttttcagatttggatgaagcaattgcatgtgctagtgaatctttggtcaaa
aatgttggtgttgactgcctaccttccgttttatctgagcttgtgaatgcgggtgaggat
ggtagctatgcactttctgctcttggaggtactcttttctatttgaaacaagcttttctg
gatgaaactctgcttagatttgcaaagttcgagttgctcccatgctctggttttggtgag
ataactcaaaaaccatatatggttcttgatgctgctgcaatggagaaccttgaagttttt
gagaacggaagaaatggagattcttctgggacactgtatgctcaattgaaccattgtgtg
acagcatttgggaaaaggttacttagaacatgggttgccagacctctgtatcatattgag
tctattaaggaacgtcaggatgctgtggcaggattgaagggagttaacggtccatttgtg
ctggagttcaggaaagagttgtccaggcttccagacatggaacgtttacttgcgcgcatt
tttgctagaagtgaagctaatggcaggaatgcaactaaagtagtgctatatgaggatgca
gcgaaaaagcagcttcaagagttcatttcggttctacgtggatgtgaactaatgatccat
gcatgctcctcacttgatgccattttagaaaatacagattctaggctactacatcatcta
ttgacaccaggtaaagggatccccgatgtccattcgattctccggcatttcaaggatggc
ttcgattgggaggaagcaaatagttcaggacgtgtaattcctgtagaaggggttgatgtg
gagtatgattcttcttgccagacaataagagacatagaaactaatttggaaaaatacctg
aaggagcagcgcaaattacttggagatgcatcgattaattatgtaacagttggtaaagac
gcatacctgttggaagtgccagaaagtttgtgccatagcatttcacaggagtacgagtta
caagcatcgaaaaagggcttcttccggtactggactccagtgattaagaatttagtaggg
aagctctctcaagctgaatctgagaaggagtctaagttgaagaccattttgcagaggtta
attggaaaattttgtgaacatcataataaatggagacaattgatttctactatctcagaa
ctggatgttttaatcagcttatctattgctagtgaatactatgaagggccaacgtgccgc
ccaataatctctccggtatcatctcctgatgaagtgccgtgcctgattgctaatagttta
ggacatcctgttctcaggagtgatacattaggcaagggtacctttgtcgctaatgatgtt
tcacttggcggttctagtcaagccaactttatccttcttactggtcctaacatgggtggg
aagtctactcttttgcgtcaagtctgcttagctgtgattttggcacagataggggcagat
gtgccggcagaaaggtttgagttgtctcccgttgaccgtatttttgttagaatgggtgct
aaagatcaaattatggttgggcatagcacattcctgacagagcttttggaaactgcctca
atgctgtctgcagcaacccgtaattctcttgtaacattggatgagcttgggcgggggaca
tcaacgtcagatgggcaagccatagctgaatcagttcttgagcattttgtgcgcaaggta
cagtgtcggggaatgttttctacccactaccataggttggctattgactatcagaaatat
cctaaggtcgccctctgtcatatggcatgcaaagttggcaaaggagttggaggtcttgag
gaagttaccttcctctatagattgacatccggtgcatgccctaaaagttatggggttaat
gttgcaaggttagctggacttccggatgtagtacttcataaagctactgcaaagtctcag
gagtttgaaggaatgtatggcaagagatcagaagatgactcgtccattctgagtttggaa
gacgaggcatcagtgataatccgaaacttgataaaattttcagctaaccagggttgcagt
tattcttcagagcacatggtccttggctcattgaacgaattgcaactgagagcaaggatg
cttcttgagcaaaattaa
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