Olea europaea var. sylvestris (wild olive): 111406449
Help
Entry
111406449 CDS
T05244
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
oeu
Olea europaea var. sylvestris (wild olive)
Pathway
oeu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oeu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
111406449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oeu03400
]
111406449
DNA repair and recombination proteins [BR:
oeu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
111406449
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_III
MutS_V
MutS_I
MutS_II
Motif
Other DBs
NCBI-GeneID:
111406449
NCBI-ProteinID:
XP_022891642
LinkDB
All DBs
Position
12:complement(3726532..3736719)
Genome browser
AA seq
640 aa
AA seq
DB search
KFSRKYIFPSFLQDPRAIRFFDRRDYYTAHGENATFIAKTYYHTTTALRQLGSGSNAIST
VSVNKNMFETVARDLLLERTDHTLELYEGNGSNWKLVKSGTPGNLGSFEDILFANNEMQD
SPVVVALFPNFRDNGCTLGLGYVNLTTRVLGLTEFLDDSHFTNVESAFVALGCKECLLPV
ESTKSSEYRSLNDAMTRCGVMVTERKKNEFKGRDLVQDLSRLVKGSIELVRDLVAGFEFA
PGALSCIISYVELLSDESNYGNYTIRQYNLDSYMRLDSAAMKALNVMESKSDANKNFSLF
GLMNRTCTAGMGKRLLHMWLKQPLLDVNEINSRLDLVQAFVEDTALRQDLRQHLKRISDI
ERLIRCLQNKRASLFHIVKLYQMLLVTGSCCGDCNVSGVGGRRAAEGWGRILRHIQKHII
LILFYFLMVLLNFYYRFCWTLYSSWLKFLPELLLSGLAWAICEYIVEVIKAPTLFATHFH
ELTALAHENGSCEHSSKNIIGVANYHVSAHIDSSSRKLTMLYKVEPGACDQSFGIHVAEF
ANFPESVVALARQKASELEDFSPMAIVSNDAKEIFAKRKREFDPDDISRGTSRAHKFLKD
FTELPLDKMDLELALQHVSKLRTDLEKDTTNSCWLQQFFQ
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
aaattttcaagaaaatacattttcccttcttttctgcaggaccctagggctattcgcttc
tttgatcgccgggactattacactgctcatggtgagaatgcaactttcattgcaaagaca
tattaccacactacaacagctttacgccagctaggaagtggatcgaatgccatttctact
gttagtgtgaataaaaacatgtttgaaacagtggcccgtgaccttcttcttgagagaact
gatcatactctcgaattgtatgagggtaatggatcaaattggaaactagtgaaaagtgga
accccgggaaatctgggtagttttgaagatattctgtttgcgaacaatgaaatgcaggat
tctccagtggttgttgctctatttccgaacttccgtgataatggatgcactttgggacta
ggctatgtgaatcttaccacacgagtgcttggattgacagagtttctcgatgatagtcac
ttcacaaatgtggagtcagcttttgttgctcttggctgcaaggaatgtctcttgcctgtt
gagagcaccaaatctagtgaatatagatccttgaatgatgcaatgacaaggtgtggtgtg
atggtaactgaaagaaagaaaaatgagtttaaaggaagagacttggtacaggatctcagt
aggcttgttaaaggttctattgaactggtaagagatctagtcgctgggtttgaatttgca
cctggagctctcagttgtataatatcctatgtagaattactttcggatgagagcaattac
ggaaactatactatccgacaatacaatcttgacagttacatgagattagattctgctgcc
atgaaggcactaaatgtcatggagagtaaatctgatgctaataaaaactttagtttgttt
ggcctcatgaataggacttgtactgctggaatgggtaaacgtttactgcacatgtggctg
aaacaacctttattagatgtaaatgaaatcaacagtaggctggatttagtgcaagccttt
gtggaggatactgctcttcggcaagatttaaggcagcatttgaaaagaatttctgatatt
gagagactgatacgctgtctccagaataaacgagcaagtttgtttcatattgttaagctt
tatcagatgctcttagttactggctcatgttgtggtgattgcaatgttagtggtgttggg
gggaggagggctgcagagggttggggaagaatattaagacacattcaaaaacacatcata
ctaattttattttattttttaatggtgctgctgaacttttattatagattttgttggact
ttatactcatcttggctaaaatttttgcctgaactactattgtcaggcctagcttgggcc
atttgtgagtacattgttgaagtgattaaagcgccaacattgtttgcaactcattttcat
gagctgactgcattagctcatgaaaatggcagttgtgagcattcttcaaagaatattata
ggtgtagcgaattatcatgtcagtgcacacatcgactcatcaagtcgcaagctgaccatg
ctttacaaggttgaacctggggcctgtgatcaaagttttgggatacatgttgcggaattt
gccaactttcctgaaagtgttgttgcgcttgctagacaaaaggcctctgaactagaagat
ttctcgcccatggcaattgtttccaatgatgccaaggagatttttgctaagcggaagaga
gagttcgatcctgatgatatatctagaggcacctcacgagctcacaaattcttaaaggac
ttcactgagttgccactagacaagatggacttggaactggcattgcaacatgtgagcaaa
ttaaggacggacttggagaaagacacaacaaacagttgctggctccagcagttctttcaa
taa
DBGET
integrated database retrieval system
