Olea europaea var. sylvestris (wild olive): 111407637
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Entry
111407637 CDS
T05244
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
oeu
Olea europaea var. sylvestris (wild olive)
Pathway
oeu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oeu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111407637
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oeu03041
]
111407637
03009 Ribosome biogenesis [BR:
oeu03009
]
111407637
Enzymes [BR:
oeu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111407637
Spliceosome [BR:
oeu03041
]
Complex A
U1 snRNP components
U1 related factors
111407637
Complex B
111407637
Ribosome biogenesis [BR:
oeu03009
]
Eukaryotic type
Pre-60S particles
Helicases
111407637
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Cas3-like_C_2
DUF6589
Motif
Other DBs
NCBI-GeneID:
111407637
NCBI-ProteinID:
XP_022893020
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All DBs
Position
13:12455604..12461899
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AA seq
654 aa
AA seq
DB search
MFNNYDSRLHDAGSYRQRRSDLMGQPPFSIPPPGPSGDAPSYGRGVPAPYRGVPVAPPSM
RGGERIGGGGAGTFGRNSSFEHGVGRGFDVTRVNSIGSRGGGFSNGAIGDRSDGRSHDGG
RGGGVSGRGFDLGRGRGRSGRGGNFSGRLSGGRSSFHGGPGGSDWRGSRPRDDLDNIALP
RQDFDNLVPFRKDFYVESPSVRAMTEQEVAMYRARRDITVQGNDIPKPIRTFQEASFPGY
CLEVIARLGFTEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLMQ
NEGPIVVILAPTRELAVQIQQEALKFGSRANVRSTCIYGGAPKGPQIRDLRRGVEIVIAT
PGRLIDMLESQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPR
EVETLARQFLRNAYKVIIGSSDLKANLSIQQVVEIMTDLEKYNRLIRLLKDVMDGSKILI
FVETKKGCDQVTRQLRMDGWPALSIHGDKSQDERDRVLAEFKSGRSPIMIATDVAARGLD
VKDIKCVINFDFPSSLEDYVHRIGRTGRAGAKGTAVTFFTHGNAKYARELIKILQQAGQA
VPPELAAMARSSGGASGSNFRSRGRGGFGGRGRFGNHGISGSNTIPLGGTRRPW
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgtttaataactatgattccaggctccacgatgccggctcctaccgtcagcgaagaagt
gatttgatgggacagccaccattttcaattccaccacctggtccaagtggtgatgcacca
agctatggccgtggagtaccagctccatatagaggtgttccagtggcacctccttctatg
aggggtggtgagagaattggaggaggtggtgctggtacttttggtaggaattcttctttt
gagcatggtgttggaagagggtttgatgttacccgtgttaacagtataggaagccgtggt
ggaggatttagcaatggggcgattggagacaggagtgatggaagaagccatgatggtggg
agaggaggtggtgtatccgggaggggttttgatttaggtcgtggcagaggtagaagtggt
agaggtggaaattttagtggtaggcttagtggaggtaggagcagttttcatggaggtcct
ggtggcagtgattggagagggagtaggcctagagatgacttagataacattgctcttccc
aggcaagattttgataacttggttccttttagaaaggacttctatgtagagagcccatct
gtgagagcaatgaccgaacaagaggttgcaatgtatcgtgccaggcgggatattactgtt
caaggcaatgatatacccaagccaatccgaacatttcaagaagcaagttttcctggttat
tgcctcgaggttattgctagattggggtttactgaaccaactccgattcaatcacaagga
tggccaatggctttaaagggtagagatttgattggcattgctgagactggttcaggaaag
accttggcctatttgctacctgctttggttcatgttagtgctcagccccggctgatgcaa
aatgaaggtccaattgtagtaatattagctcctaccagagaattggctgttcagattcaa
caagaagctttaaaatttggatcacgtgcaaatgtacggagcacatgtatttatggcggt
gccccaaaaggtccacaaattcgtgatcttagaagaggggttgaaattgtgattgctact
cctggaagattgatagatatgctggaatctcaacatacaaacttgagaagggtgacttac
cttgtgttggacgaggctgatcgcatgctggatatgggatttgaaccccaaatcaggaaa
attgtttcccagattcgcccagataggcaaaccttgtattggagtgccacgtggccaagg
gaggtggaaactctagcaaggcaatttctacgcaatgcttataaggttatcattgggtct
tcagacctgaaagcaaatctatctatacagcaagttgttgaaattatgacagatttggag
aaatataacaggttgatcagattgctgaaagacgtgatggatggaagtaaaattttaatt
tttgtggaaacaaagaaagggtgtgatcaagttacaagacagctgagaatggatggatgg
ccagcattatccattcatggtgataaaagccaggatgaaagggatcgagtccttgctgag
tttaagagtggcagaagtcctataatgattgccactgatgttgctgctcgtggtcttgat
gtgaaggacataaaatgtgtcatcaatttcgacttcccatcaagtctcgaggattatgtc
cacaggattgggcgaactggtcgtgcaggagccaaaggaactgctgtcacattttttacc
cacggaaatgccaagtacgcaagagaacttattaagatcctgcaacaagcaggacaagct
gttcctcctgagttggctgcaatggcccgatccagcggaggagcttccggaagcaacttc
cgttccagaggtcgaggaggttttggtggtcgaggaagatttggcaaccatgggatatcg
gggtcgaacacgatccctcttggtggtacaaggaggccttggtag
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