Olea europaea var. sylvestris (wild olive): 111409453
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Entry
111409453 CDS
T05244
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
oeu
Olea europaea var. sylvestris (wild olive)
Pathway
oeu03020
RNA polymerase
oeu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oeu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111409453
09124 Replication and repair
03420 Nucleotide excision repair
111409453
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oeu03021
]
111409453
03400 DNA repair and recombination proteins [BR:
oeu03400
]
111409453
Enzymes [BR:
oeu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111409453
Transcription machinery [BR:
oeu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
111409453
DNA repair and recombination proteins [BR:
oeu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
111409453
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_7
RNA_pol_Rpb1_6
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
111409453
NCBI-ProteinID:
XP_022895267
LinkDB
All DBs
Position
14:complement(7008342..7018524)
Genome browser
AA seq
1641 aa
AA seq
DB search
MDIRFPYSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKPAGLSDPRLGTI
DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEDEPK
FKQAMRIRNPKNRLRKILDACKNKTKCEGGDEIDVRGQDSDEPIKKKRSGCGAQQPKISI
DGMKMIAEYKLQKKRSDDQEQLPEPVERKQQLTAEKVLSVLKRISDDDCQLLGLNPIYAR
PDWLILQVLPVPPPPVRPSVMMDTSSRSEDDLTHQLAMIVRHNENLKRQERNGAPAHIIS
EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMLVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPRQIN
LLRYAAWHQESEKGFITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISNAKNEVKELIRSAQEKQL
EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQP
LESLKLKKSGFNNMYRYEIDDPDWNPSYMLPEAVEDLKTIREIRSVFDAEVQKLEVDRYQ
LATEIATTGDNSWPLPVNIKRLVLNAQKTFKVDFRRPSDMHPMEDEEIDPDKISPWLLRI
ELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELQDE
SAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKLNKFDETEGFKAENEWMLDTEGVN
LLAVTCHEDVDATRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDGSYVNYRHLAILC
DTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDYLRGVTENIMLGQ
LAPIGTGDCALLLNEEMLKQAIEIPLPSYMEGGMDFGMTPARSPHSGTPYHDGMMSPSYL
LSPSLRLSPVTDAQFSPYAGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGY
SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPVYS
PTSPGYSPTSPSYSPTSPSYSPTSPSYNPSARYSPSLAYSPTSPKITPSSPYSPSSPSYS
PTSPSYSPTSPTYSPSSPTYSPSSPYNSGASPDYTPSSPPYSPSGGYSPSAPGYSPSSTS
QYTPRVSEKDDKSVQNDKSSR
NT seq
4926 nt
NT seq
+upstream
nt +downstream
nt
atggatatacgcttcccttattcgccggcggaggtggccaaggtccgagtcgtccaattt
ggtatcctcagtcctgatgaaattaggcaaatgtccgtggttcacatagagcatagtgag
acaacggagagaggtaagcctaagccggcgggattgagtgaccctcgacttgggaccatt
gatcggaagatgaagtgcgaaacatgtatggcaaacatggcagagtgccctggtcacttc
ggtcaccttgagctcgcgaaacccatgtttcatattggcttcttgaagaccgtgctcagc
atcatgcgttgtgtttgcttcaattgctcgaaaatattagctgatgaggatgaaccaaag
ttcaaacaagctatgagaataagaaaccctaaaaatagactcagaaagatattagatgcc
tgcaaaaataaaactaaatgtgaaggcggtgatgagatcgatgtacgagggcaagattct
gatgaaccaattaagaagaaaaggagtggctgcggtgctcagcagccgaaaatttctatt
gatggtatgaagatgattgccgagtacaagcttcaaaagaagagatctgatgaccaggaa
caactgccagaacctgttgagcgaaaacagcaacttactgccgaaaaggttcttagtgtc
ctgaagagaataagtgatgatgattgtcaattgttaggtttgaatccaatatatgcacgc
cccgactggctgattcttcaagttcttcctgtacctcctcctcctgttagaccttctgtg
atgatggatacttcttcaaggagtgaggatgatttaactcatcagctagccatgattgtt
aggcataatgagaacctgaagaggcaagagcgaaatggggctcctgcacacatcatttca
gagtttgcacaattgttgcagtttcatatagctacatatttcgataatgacctgccaggg
cagccaagggccactcaaagatctggtcgaccaatcaaatcaatatgtagcagactgaag
gcaaaagaaggtcggatcagaggtaacttgatgggtaaacgagtggatttttcagctcgg
acagtgatcacacctgatccgactattaacattgatgaactgggagtaccatggagtatt
gcgctaaatctcacatatccagaaactgtcactccatataacatcgaaaggttgaaagag
cttgtggaatatgggcctcatcctcctccaggtaaaactggtgcgaagtatataattaga
gatgatggacaaaggcttgatctacggtacttgaagaaaagcagcgatcaacatctagaa
cttggatataaggtggagcggcatttgaatgatggggactttgtcctgttcaataggcaa
ccaagtcttcacaaaatgtccattatggggcatagaatcaagatcatgccttactcaacc
ttccgcctaaacttgtccgttacttcgccctacaatgctgattttgatggggatgaaatg
aacatgcacgttccccagtcatttgaaactagagcggaagtacttgaactgatgttggtt
cctaaatgcattgtgtcacctcaatcaaatcgacctgtgatggggattgtccaagataca
cttttagggtgccgcaaaattaccaaaagagatacatttatcgagaaagatgttttcatg
aacattttaatgtggtgggaggattttgatggcaaagtaccggctccagcaattttgaaa
cctaggcctctttggactgggaaacaagtttttaatctaataattccaagacagataaat
ctcttgagatatgcagcctggcatcaggaatctgaaaaaggattcataactcctggggac
actcaagttcgaatagagaaaggagagttactttctggtaccttatgcaagaagacactt
ggaacttcgactggaagtcttatacatgttatttgggaggaggttggtccagatgctgct
cggaagtttctgggacatacacagtggcttgtcaattattggcttttgcagaatgctttt
agcattggaattggagatacaattgctgatgctgcaacaatggagaaaattaatgaaacc
atttcaaatgcaaagaatgaggtgaaggaacttatcaggtctgctcaagaaaagcagttg
gaggctgaacctggtcgaacaatgatggaatcatttgaaaacagagtgaatcaggtgttg
aataaggcccgtgatgatgctggaagcagtgcacagaagagcttgtcggaaagtaacaac
ctcaaggctatggtcactgcgggatccaagggaagtttcatcaacatatcacaaatgact
gcttgtgtggggcaacagaatgttgaaggtaaacgaattccttttggattcatagaccgg
acattgccccacttcactaaagatgattatggtccagaaagtcgtggttttgtggagaac
tcgtatttaagagggttgaccccccaagagttcttcttccatgctatgggtggtagggaa
ggtctaatagatactgcagtgaagacttctgagactggatacattcagaggcgattggtt
aaggccatggaagatattatggttaagtatgatgggactgtgaggaactctttgggggat
gttattcagtttctttacggtgaagatggcatggatgctgtctggattgaatcacagcca
ctggaatctttgaaattgaaaaaatcaggtttcaataacatgtatagatatgagattgat
gatccagattggaatcctagttacatgttgcctgaagctgttgaagatctaaaaacaatc
cgtgagattcgcagtgtctttgatgcagaggttcagaaacttgaagtggatagataccaa
cttgcaacagagattgcgacaacgggtgacaactcgtggcccctgcctgttaatatcaag
aggcttgtgttaaatgcgcaaaagacctttaaagttgacttccgaaggccttctgatatg
cacccaatggaggatgaagagattgaccctgacaagatctctccctggttgcttcgaata
gaattaaatcgagaaatgatggtcgataagaagctcagcatggcagatatagcagaaaag
attaatcttgaattcgatgacgatctcacatgcatatttaatgatgataatgctgagaaa
ctgatcctccgtattcgtattatgaatgatgaagctcctaagggtgagctgcaggatgaa
tcagccgaggatgatgtgttcctcaaaaagattgaaagtaacatgttgacagaaatggcc
cttcgaggcattccagatatcaataaagtgttcataaaaaacagcaaactgaataagttc
gacgaaaccgaaggatttaaggcagagaatgagtggatgttggatacagaaggtgttaat
cttttggctgtcacatgtcatgaggatgttgatgcgacgaggaccacaagtaatcactta
attgaagttatcgaagttctcggaattgaagcagtccgtaaagccttgttggatgagctg
cgcgttgtcatatcttttgacggatcttatgtaaattacaggcatttggctatattgtgt
gataccatgacatatcgtggtcacttgatggccatcactcgtcacgggattaatcgcaat
gatactgggcccatgatgagatgctcatttgaagaaaccgtggacattcttctggatgct
gctgtctttgctgaaacagattacctgaggggtgtcactgaaaatataatgttgggtcag
cttgcaccgattggcacaggagactgcgccttgttgctgaatgaggagatgttaaaacaa
gccattgagatccctctgccgagctatatggaagggggcatggattttggcatgactcct
gcccgttcaccccattctggaacaccatatcacgatggcatgatgtctccaagttatctg
ctaagtccaagtctgcggttatctcctgttacagatgctcaattttctccttatgccggt
ggaatggctttttctccgacatcgtctccaggctacagcccatcatcccctggatacagt
ccatcatctcctggatatagccccacttctcctggatatagccctacttcccctggttat
agtcccacttccccaacctatagtcctagttctcctggatatagcccaacaagtcctgcg
tattctcctaccagtccatcgtattcaccaacttctcctagttatagccctacctcacct
agttacagcccaacgtcaccaagctacagcccgacgtcccctagctacagcccgacatct
ccagcgtacagcccgacttctccagcttacagcccgacgtctccagcctacagcccgact
tctccctcatacagccctacgtctccatcttacagcccaacctcgccttcctatagcccc
acctcgccatcgtacagtccaacttctccatcatacagccccacctcacctgtgtatagc
ccaacctctcctggttatagccctacctccccgagctacagccctacctctccaagttac
agtcctacgtccccgagttacaatccctcagcaagatacagcccttccctagcatattca
cctactagtcctaagataacaccatctagtccatatagtccctcctctccgagttacagc
ccaacatcgccttcgtactctccgacatctccgacatattctccttctagtccaacatat
agtccaagcagcccgtataactccggtgctagtcccgactatactcctagttctccacca
tacagtccaagtggagggtactcacctagtgcacctgggtattccccttcctcaacaagc
caatacactccccgtgttagtgagaaagatgacaaaagtgttcagaatgataagagcagc
cgctga
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integrated database retrieval system
