Olea europaea var. sylvestris (wild olive): 111409808
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Entry
111409808 CDS
T05244
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
oeu
Olea europaea var. sylvestris (wild olive)
Pathway
oeu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oeu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111409808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oeu03019
]
111409808
03041 Spliceosome [BR:
oeu03041
]
111409808
03009 Ribosome biogenesis [BR:
oeu03009
]
111409808
03016 Transfer RNA biogenesis [BR:
oeu03016
]
111409808
Enzymes [BR:
oeu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111409808
Messenger RNA biogenesis [BR:
oeu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
111409808
Spliceosome [BR:
oeu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
111409808
Complex C
U4/U6.U5 tri-SnRNP related factors
111409808
Ribosome biogenesis [BR:
oeu03009
]
Eukaryotic type
Pre-60S particles
Helicases
111409808
Transfer RNA biogenesis [BR:
oeu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
111409808
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
111409808
NCBI-ProteinID:
XP_022895635
LinkDB
All DBs
Position
15:complement(2279634..2288522)
Genome browser
AA seq
995 aa
AA seq
DB search
MESLKRKSLEGTMEDTESPPLKQHRENDLVGLDGSVACVHDVSYPQGYVPRVLNSTMATQ
EDAKPAKEFPFKLDPFQSEAIRCIHHGESVMVSAHTSAGKTVVALYAIAMSLQNKQRVIY
TSPIKALSNQKYREFKEEYSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEVIREVA
WIIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIV
YTDYRPTPLQHYIFPSGGSGLYLAVDEKGKFREDSFQKALNALSPITEGDRKRENGKWQK
GLVVGKAGEDSDIFKMVKMIIQRQYDPVICFSFSKMECESLAMQMAKMDLNDDNEKVNVE
TIFWSAMDMLSDDDKKLPQVSNLLPILKRGIGVHHSGLLPILKEVIEILFQEGFIKCLFA
TETFSIGLNMPAKTVVFTNVRKFDGNKFRWISSGEYIQMSGRAGRRGIDERGICILMVDE
KLEPSTAKMMLKGSADPLNSAFHLSYNMLLNQIRSEDGDPENLLRNSFYQFQADRAIPDL
EKQAKVLEEERDSIIIEEEDSLENYYSLLQQYKILKKDVRDIVFSPKYCLPFLQPGRLVC
IQCTKNDESSSSFSIKDEVTWGVIINFERVTGLSEDDVNKKAEDANYTVDVLTRCRVHKD
EVAKKIIKIVPLKDPGEPAVISVPISQIDSLSSVRLIIPKDLLPLEARENTLKKVSEVLS
RFAKGGLPLLDPEDDMKVQSGSFKKAVRRIEALENLFEKHEIAKSLLIEQKLTVLHKKKE
LTAKIKSIRKTMRSSSALAFKDELKARKRVLRRLGYITSDDVVELKGKVACEISSADELT
LTELMFSGVLKDMKVEEMVALLSCFVWQEKLLGATKPGEELELLLTQLHDIARRVAKVQL
ECKVQIDVENFVSSFRCDIMQAVYDWAKGSKFSTIMQFAQVFEGSLIRAIRRLEEVLQQL
IQAAKSIGETHLEAKFEEAITKIKRDIVFAASLYL
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atggagtctttgaagaggaagtcattggagggcacaatggaggataccgagtctccgcca
ctgaaacaacatagagagaatgatttggtaggtttggatggctctgtcgcatgtgtgcac
gatgtgtcatatcctcaagggtacgtgcctcgtgtgttaaattccaccatggcaacccaa
gaagatgcaaaaccagctaaggagtttccattcaagcttgacccttttcagtccgaagcc
atcagatgcatccaccatggcgagtcagtcatggtctcagcgcacacatctgcgggtaag
acagttgtggcattatatgctattgccatgtcgctgcagaacaagcaacgtgttatatat
acatcaccaatcaaagctctcagcaaccagaagtacagagagttcaaagaagagtattca
gatgtggggttgatgacaggtgatgtcacaattgatcccaacgcctcttgcttggtgatg
acaacagagatctggcgaagcatgcagtacaaaggatcggaggttataagggaggtggcg
tggattatttttgatgaggtgcattacatgcgagacagagagagaggtgttgtatgggaa
gagagtattgtaatggccccaaagaactctagatttgttttcctctctgctacagtgccc
aatgcaaaggagtttgctgattgggttgcaaaggtccaccagcaaccatgtcatattgtt
tatactgattaccgaccaacaccccttcaacattatatcttcccttcggggggcagtggt
ctgtatttagctgttgatgaaaaaggaaagtttcgagaggatagctttcagaaagcttta
aatgcgctctctcccatcactgaaggtgacagaaaaagagagaatggaaaatggcagaaa
gggttagttgttggtaaagcaggcgaggatagtgacatatttaaaatggtgaaaatgatt
attcagcgtcagtatgatccagtcatatgtttcagcttcagcaaaatggaatgtgaatca
cttgccatgcagatggctaaaatggatctaaacgatgacaatgagaaagtgaacgttgaa
accattttctggagtgccatggacatgctatcagatgatgataagaagttgcctcaggta
tcaaatttgctgcctatattaaaacgaggaatcggcgtgcatcattctggattacttccc
atactgaaggaagtcattgaaatcctattccaggaaggattcatcaagtgtttatttgcc
acagagaccttcagcataggattgaacatgccagcaaaaactgtcgtcttcactaatgtt
cgcaaatttgatggcaataaatttagatggatatccagcggagagtacatacagatgagt
ggtcgggctggtcgtcgaggaattgatgaacgtggtatctgcattctcatggttgatgag
aagctagaaccttctacagctaaaatgatgttaaaaggaagtgctgatcctttgaatagc
gcatttcatttaagctacaacatgcttctgaatcaaattcgatctgaagatggtgatcct
gaaaatttactccgtaattcattttatcaatttcaagcagaccgagctattcctgatctt
gagaaacaagcaaaagttcttgaagaggaaagggattcaattataattgaagaagaagat
agcttggaaaattattactctctgctacaacaatataaaattttgaagaaggatgtccgt
gatattgtattctctccaaaatactgtttaccctttctacagccaggaaggcttgtatgc
attcaatgtacaaagaatgatgagtcttcctcatcattctcaatcaaggatgaggtcaca
tggggggttataatcaattttgaaagggttacagggctttctgaagatgatgtgaataaa
aaggcagaggatgcgaactatacagtggacgttctcacgagatgtagagtgcataaagac
gaagtggctaaaaaaataatcaagatcgtcccactgaaggaccctggagaaccagctgtt
atttctgttcctatttcgcagattgacagtttaagtagtgttcggttaataataccaaaa
gatcttttgccattggaagctcgagaaaatacactcaagaaagtgtctgaagttctctcc
agatttgcaaaaggaggcttacctctcttagatcctgaagatgacatgaaagttcaaagc
ggctcatttaagaaggcagtacgaaggatagaagccttggagaacctgtttgaaaagcat
gaaattgcaaagtctctgctgattgagcaaaagctcacagttctgcacaaaaaaaaggaa
cttacagccaaaatcaaatcaataaggaaaacaatgcgttcttcatcagccttggctttc
aaagatgaactgaaagcaaggaaaagagtactgaggagactcggatacattacaagtgat
gatgttgtggagttaaaggggaaagttgcatgtgaaatcagcagtgcagatgaattaaca
ctgaccgagctcatgtttagtggggttttgaaggacatgaaggtggaggagatggtagca
cttctttcatgttttgtatggcaagaaaagcttctgggtgctacaaagcctggagaggaa
cttgagttacttttgactcaacttcatgatatagctcggagagttgctaaagttcagctt
gagtgcaaggttcagattgatgttgagaatttcgtaagttctttcagatgtgatatcatg
caggctgtgtatgactgggccaagggatccaaattttccacaatcatgcaatttgcacag
gttttcgaaggcagcttgatcagggcaatccggagactggaggaagttcttcagcagcta
atacaagcagcgaaatccattggtgagacacaccttgaagcgaaatttgaagaggccatc
accaaaatcaagagggatatagtctttgcagcatctttgtacttatag
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