Olea europaea var. sylvestris (wild olive): 111412454
Help
Entry
111412454 CDS
T05244
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
oeu
Olea europaea var. sylvestris (wild olive)
Pathway
oeu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oeu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111412454
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oeu03041
]
111412454
03009 Ribosome biogenesis [BR:
oeu03009
]
111412454
Enzymes [BR:
oeu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111412454
Spliceosome [BR:
oeu03041
]
Complex A
U2 snRNP components
U2 related factors
111412454
Complex B
111412454
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
111412454
Ribosome biogenesis [BR:
oeu03009
]
Eukaryotic type
90S particles
Helicases
111412454
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
ResIII
nSTAND3
ABC_tran
T2SSE
SRP54
AAA_30
FtsK_SpoIIIE
PhoH
NACHT
AAA_7
AAA_29
Flavi_DEAD
TsaE
Motif
Other DBs
NCBI-GeneID:
111412454
NCBI-ProteinID:
XP_022899156
LinkDB
All DBs
Position
16:20609067..20614037
Genome browser
AA seq
723 aa
AA seq
DB search
MGTERKRKVSLFDVVDEAAISAKKSNGALAATAVSTINKWNGRPYSQRYYEILEKRKTLP
VWHQKEEFLQALKENQTLILVGETGSGKTTQIPQFVLDAIEIETPDKRRKFMVGCTQPRR
VAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYK
VIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFSSAPLMKVPGR
LHPVEIFYTQDPERDYLEAAIRTVVQIHTCEPPGDILVFLTGEEEIEDACRKITKEIGNM
GDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPAVEGGPAGRKIVISTNIAETSLTIDGIVY
VIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERSFHNDLQ
PQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNM
TKLGEIMSELPLDPQMAKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQKAADEAKA
RFGHIDGDHLTLLNVYHAYKQNKEDPQWCYENFVNHRALKSADNVRQQLARIMARFNLKL
CSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVI
YNEYVLTSRNFIRTVTDIRGEWLIDIAPHYYDLTNFPNCEAKRQLEKLYKKRENVREENK
NRK
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgggaacagagagaaagaggaaggtgagcttgttcgacgtagttgacgaggcagcgatc
tcggcaaagaagtccaatggcgccttggccgccacggcagtgtcgacaataaacaaatgg
aatggaaggccctattctcagagatactacgagatattggagaagaggaagaccctccca
gtgtggcaccaaaaagaggagttcctgcaggctctcaaggaaaatcaaaccctaattcta
gttggtgaaacgggtagtggtaaaaccactcagattcctcagtttgttcttgacgcaata
gagatagagacccctgataagcgtaggaagttcatggttggatgcacccagcccaggagg
gtggctgcaatgtctgtttcacgtcgagttgccgaagaaatggatgtaactattggagag
gaagtaggttatagtattcggtttgaggactgcagcagtgctagaacagttctaaagtac
ttaaccgatggtatgcttttgagagaagccatgacagatccgctgttggaaagatacaaa
gtgataattcttgatgaagctcatgagagaacattggcaacagacgttttgtttggactt
ctgaaggaagtgttgaaaaataggccggacctgaaactagttgtgatgagtgctacactt
gaggctgaaaagtttcagggttactttagtagtgcaccgctcatgaaagtccctggaagg
cttcaccctgtggagatattttacacccaggatccggaaagggattacctggaagcagcc
atacgcactgttgtacagattcacacgtgtgaacctcctggtgatatacttgtctttctt
actggagaagaggagattgaagatgcatgtcgcaagataacgaaagaaataggtaatatg
ggagaccaggtgggtcctgttaaagtagttcctctgtattccacgcttcctccagctatg
cagcagaagatttttgaacctgctcctccacctgcagtggagggtggtcctgctggaagg
aagatagttatatcaacaaatattgcggaaacatctttaaccattgatggcatagtgtat
gttattgatccagggttcgcaaagcaaaaggtttataacccaagaattcgtgttgagtct
cttttggtatctcctatatcgaaggcaagtgctcaccaacgatcaggacgtgctgggaga
acacaaccaggaaaatgtttcaggctttacactgaaaggagtttccataatgatctccaa
ccacaaacttatccagagatattgcggtcaaacctagctaacacagtccttactttgaag
aaattgggaatagatgacctggtccattttgattttatggatccacctgctccagaaaca
ctgatgagagctttggaggtcttgaattaccttggagctctggatgatgatgggaacatg
accaagctgggtgaaattatgagtgaacttccactggatccccagatggcaaaaatgctt
gttgttagccctgaattcaactgttcaaatgaaatcctttctatatctgctatgctttca
gtacccaattgctttgtccggcctagggaggcccaaaaagctgcagatgaagccaaagct
cggtttggtcacattgatggggatcatcttacactcttgaatgtgtatcacgcttacaaa
caaaataaggaggatccgcaatggtgttatgagaactttgtcaatcatagagcattgaaa
tctgcagataatgttcgacagcagctagctcgtattatggccaggttcaacctcaagcta
tgcagcacagatttcaacagccgtgattactacgtcaacattagaaaagctatgctagct
ggatatttcatgcaggttgcccatttagagcgcaccgggcactatcttactgtgaaagac
aatcaagttgttcacttgcatccttcaaattgcttggaccataagccagagtgggttatc
tacaacgaatatgtcttaacaagcagaaatttcatccgtacagtaactgatattcgtggt
gaatggttgattgacatagcccctcattactatgatttgacaaacttccccaactgtgaa
gcaaagcggcaacttgagaagctgtataagaaacgggagaatgtgagggaggagaacaag
aatagaaagtga
DBGET
integrated database retrieval system
