Ornithinimicrobium faecis: NF556_04405
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Entry
NF556_04405 CDS
T10132
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ofa Ornithinimicrobium faecis
Pathway
ofa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ofa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NF556_04405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ofa03021
]
NF556_04405
03400 DNA repair and recombination proteins [BR:
ofa03400
]
NF556_04405
Enzymes [BR:
ofa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NF556_04405
Transcription machinery [BR:
ofa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NF556_04405
DNA repair and recombination proteins [BR:
ofa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NF556_04405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
USQ80898
LinkDB
All DBs
Position
963731..967636
Genome browser
AA seq
1301 aa
AA seq
DB search
MLDVNFFDELRIGLATAEQIRRWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAGVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDEDGRHQALPSLEAEIDSERKVLEDRRDADVNTRAVKLEAD
LAELEAEGAKADARRKVKDGAEREMNQIRRRADQQVERLDQVWDRFKNLKVQDLEGDEIL
YREMRDRFGMYFEGGMGAAALQKRLQNFDLEAEVELLREIIATGKGQKKTRAIKRLKVVT
SFLTTDNNPDGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRAVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLDHAQNIKSAKRMVERGR
SVVWDVLEEVITDHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMIIGLFHLTSETFGTPEVAE
DGGPVRSFTSIAEARMAYDAGAIEIGTPIRLRVRDTAAPLGHELPEGNEVTEDGIASEFI
VNTTLGRAIFNNALPPNYPFVNDVVDKKRLSSIVNDLAERYTKVQVAASLDSLKDTGFHW
ATRSGTTVAISDVMTPPRKAEILESYDAKAAKVQTQYERGLITDDERRQELIEIWTQATN
EVAKELETTMPKDNTIYRMVTSGARGNWFQLRQIAGMRGLMANPKGEIIPRPIKSNFREG
LSVLEFFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTDRGFLMPIGV
QTPSGDLREHDDVETAVYARTLAQDVEHDGTVLAEAGIDLGDVVIDALVAAGVAEVKVRS
VLTCESLVGTCAKCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDD
ITQGLPRVVELFEARTPKAVAPIAEATGRVQIEDTDKSRRILLVPDDGSEEHAYPVTKRQ
RLLVADGEHVEVGRQLVQGAIDPKQVLRILGPRAAQQHLVDEVQKVYRQQGVSIHDKHIE
VIVRQMLRRITIIEAGDAQLLPGELVERGRFETENRRVVSESGKPASGRPELMGITKASL
ATDSWLSAASFQETTRVLTEAAMQAKSDPLLGLKENVILGKLIPAGTGLPRYRNLTVEPT
EEAKAAAYAVPDYDQFEYPAFGPGSGEAVRLDDLSVGDDRF
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaactttttcgacgagttgcggattggcctggccacggcggagcagatc
cgtcgctggagccacggcgaagtcaagaagcccgagaccattaactaccgcaccctgaag
ccggagaaggacgggctcttctgcgagaagatcttcggtccgacccgtgactgggagtgc
tactgcggcaagtacaagcgcgtccgtttcaagggcatcatctgtgagcgctgcggcgtt
gaggtgacccgcgccggtgtgcgtcgcgagcggatgggccacatcgagctcgccgctccg
gtgacccacatctggtacttcaagggtgtccccagccgtctgggctacctgctcgacctg
gccccgaaggacctcgagaaggtcatctacttcgcggcctacatgatcacgtccgtggac
gaggacggccgccaccaggcgctgccctcgctcgaggccgagatcgactccgagcgcaag
gtgctcgaggaccgtcgtgacgccgacgtcaacacccgcgccgtcaagctcgaggccgac
ctggccgagctcgaggccgagggtgccaaggccgacgcccggcgcaaggtcaaggacggc
gccgagcgggagatgaaccagatccgtcgtcgcgcggaccagcaggtcgagcgcctcgac
caggtctgggaccggttcaagaacctcaaggtccaggacctcgagggtgacgagatcctc
taccgcgagatgcgtgaccggttcggcatgtacttcgagggcggcatgggtgctgcggcg
ctgcagaagcgcctgcagaacttcgacctcgaggccgaggttgagctgctccgcgagatc
atcgccaccggcaagggccagaagaagacccgcgccatcaagcgcctcaaggtcgtcacc
tcgttcctgacgacggacaacaaccccgacggcatggtcctggactgcgtcccggtcatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctc
aacgacctctaccgtcgcgtgatcaaccgcaacaaccggctcaagcgactgcttgacctg
ggtgcgccggagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgactcg
ctgttcgacaacggtcgccgcggtcgcgccgtcaccggcccgggcaaccggccgctgaag
tcgctgtccgacatgctcaagggcaagcagggtcgcttccgtcagaacctgctcggcaag
cgcgtcgactactccggccgttcggtcatcgtcgtcggcccgcagctgaagctgcaccag
tgcggtctgcccaagcagatggcgctggagttgttcaagccgttcgtgatgaagcgcctg
gtcgacctggaccacgcccagaacatcaagtccgccaagcggatggtcgagcgcggccgc
tccgtggtgtgggacgtgctcgaggaggtcatcaccgaccaccccgtgctgctgaaccgt
gcgcccacgctgcaccgcctgggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtctgcaccgccttcaacgcggacttcgacggtgaccag
atggccgtgcacctgcccctgtcggcagaggcgcaggccgaggcccggatcctgatgctc
tcgagcaacaacatcctcaagccggccgacggtcgcccggtgaccatgcccacccaggac
atgatcatcggtctgttccacctgacctcggagacgttcggcacgccagaggtggccgag
gatggtgggccggtgcggtccttcacctcgatcgccgaggcccggatggcctacgacgcg
ggtgccatcgagatcggcacgccgatccggctgcgcgtgcgggacaccgccgcaccgctg
ggtcacgagctgcccgagggcaacgaggtgaccgaggacgggatcgcgtccgagttcatc
gtcaacaccacgctgggccgcgcgatcttcaacaacgcgctgccgccgaactatccgttc
gtcaacgacgtggtcgacaagaagcgtctctcctcgatcgtcaacgacctggccgagcgc
tacaccaaggtgcaggtcgcggcgtcccttgactcgctcaaggacaccggcttccactgg
gcgacgcgctcgggcacgacggtggccatctccgatgtgatgaccccgccgcgcaaggcc
gagatcctggagtcctatgacgccaaggccgccaaggtccagacgcagtatgagcgtggt
ctgatcaccgacgacgagcgccgtcaggagctcatcgagatctggacccaggcgaccaac
gaggtcgccaaggagctcgagaccacgatgcccaaggacaacaccatctatcggatggtg
acctcgggtgctcgaggcaactggttccagctgcgtcagatcgccggcatgcgtggcctg
atggccaaccccaagggtgagatcatcccgcgcccgatcaagtccaacttccgtgagggc
ctgtcggtgctggagttcttcatctccacgcacggtgcccgcaaggggctggccgacacc
gcgctgcggaccgccgactcgggttatctgacccgtcgtctggtggatgtcagccaggac
gtcatcatccgtgaggacgactgcggcaccgaccgtggcttcctgatgccgatcggcgtg
cagacgccgagcggtgacctgcgcgagcacgacgacgtcgagactgctgtctatgcccgg
accctggcacaggacgtcgagcacgacggcaccgtgctggccgaggctggcatcgatctc
ggtgacgtggtcatcgacgctctggtcgctgcgggcgtcgcggaggtcaaggtccggtcg
gtgctcacctgtgagtcgctggtcggcacctgcgccaagtgctacggccgttcgctggcc
accggcaagctggtcgacatcggtgaggccgtcggcatcatcgcggcccagtccatcggt
gagcccggcacccagctgacgatgcgcaccttccacaccggtggtgtggccggtgacgac
atcacgcagggtctcccgcgtgtggtcgagctgttcgaggcccgcacgccgaaggcggtc
gccccgatcgccgaggccaccggtcgcgtccagatcgaggacaccgacaagtcccgtcgg
atcctgctggtgcccgacgacggctccgaggagcacgcctacccggtcaccaagcggcag
cgtctgctggttgccgacggcgagcacgtcgaggtcggccgtcagctggtccagggtgcg
atcgaccccaagcaggtcctgcgcatcctcggcccgcgtgctgcccagcagcacctggtc
gatgaggtccagaaggtctaccgccagcagggtgtgtcgatccacgacaagcacatcgag
gtcatcgtgcggcagatgctgcgccggatcacgatcatcgaggccggtgacgcccagctg
ctgccgggtgagctggtcgagcgtggtcgcttcgagaccgagaaccgtcgcgtcgtgtcc
gagtccggcaagccggcctcgggtcgtcccgagctgatgggcatcacgaaggcctcgctg
gccaccgactcgtggctgtccgcggcgtccttccaggagaccacccgggtgctcacggag
gcggccatgcaggccaagtccgacccgctgctgggcctgaaggagaacgtcatcctcggc
aagttgatcccggctggcacgggtctgccgcgttaccgcaacctcaccgtggagcccacg
gaggaggccaaggcagcggcctacgccgtcccggactacgaccagttcgagtaccccgcc
ttcgggccgggctcgggcgaggccgtccgactggacgacctgtctgtcggagacgaccgc
ttctga
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integrated database retrieval system
