Oxalobacter formigenes: BRW83_0079
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Entry
BRW83_0079 CDS
T04835
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ofo
Oxalobacter formigenes
Pathway
ofo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ofo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BRW83_0079 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ofo03021
]
BRW83_0079 (rpoC)
03400 DNA repair and recombination proteins [BR:
ofo03400
]
BRW83_0079 (rpoC)
Enzymes [BR:
ofo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BRW83_0079 (rpoC)
Transcription machinery [BR:
ofo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BRW83_0079 (rpoC)
DNA repair and recombination proteins [BR:
ofo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BRW83_0079 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
PYNP_C
Motif
Other DBs
NCBI-ProteinID:
ARQ44856
LinkDB
All DBs
Position
complement(68273..72508)
Genome browser
AA seq
1411 aa
AA seq
DB search
MKALLDLFKQVQQDEQFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPAAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAFVVTDPGMTPLKKCQIMSEDDYAAKYEEFGDEFSASM
GAEGIRELLRSIDINAEAELLRNELKDSKSEAKIKKYAKRLKVLEAFQRSGIKPEWMIME
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELRAPEIITRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVITVGPQ
LKLHQCGLPKLMALELFKPFIFNKLELMGLATTIKAAKRLVEIQEPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQLEA
RTLMLASNNILFPSNGEPSIVPSQDMVLGLYYATREKINGKGEGMMFTDISEVQRAYDNK
EVELATRITVRLPDYVKDPLSGEMVKRLMRYETTVGRALLSEILPEGLPFSVLNTPLKKK
EISRLINTSFRKCGLRATVVFADRLMQSGFRLATKAGISICINDMLVPKQKVDLISTAEQ
EVKQIEQQYASGLVTAGERYNKVVDIWGKTGDSVGKAMMDQLKVQDVVKRDGSTGTQESF
NSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTHEGVVMKALIEGGEVIEALGDRI
LGRVSANDIINPESREVLFEAGTLLDEDKIEEIERLGIDEVKVRTPLTCETRYGMCAKCY
GRDLGRGSLVNSGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSAVASSVEARSNGTIH
FTSTMRYVTNDKGDQIVISRSGEIIITDDVGRERERHKVPYGATLLVNDGLPVKAGKVLA
TWDPMTRPIITEYAGTIRFENVEEGVTVARQVDEVTGLSTLVVIDPKRRGTSTKSARPQV
KLLNDSGEEVKIAGTEHAVTISFQVGALLMVQDGQKVSVGEVLARIPTESQKTRDITGGL
PRVAELFEARSPKDAGTLAEVTGTVAFGKETKGKQRLEITDMDGNRHEFLIGKDKQVLVH
DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVNVVDAGDTSYITGEQVERSELLDENDRVIAEGKRPATYENVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKKDGLRGLKENVIVGRLIPAGTGLAMHRARKQKSVWEQEE
RAALQRAEQELPQEEPMQDISDVVSENPEHE
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcactgctcgatctattcaagcaagttcagcaagatgaacaattcgatgccatc
aaaattggtctggcatcgccagaaaaaatcaggtcctggtcttacggcgaagtaaagaaa
ccggaaacaatcaactatcgtaccttcaaaccggaacgtgacggcctgttttgcgccaag
attttcggaccgatcaaggattatgaatgtttgtgcggcaagtacaaacggttgaaacat
cgtggtgttatttgtgaaaaatgtggcgttgaagtcacgctggccaaagtccgtcgtgaa
cggatgggccatattgaactggcgtctcctgctgcccatatctggtttctgaaatccctg
ccatcccgtctcggtatggtgctggatatgacgctgcgcgatatcgaacgcgtcctgtat
ttcgaagctttcgtcgttaccgatcctggcatgaccccgttgaagaaatgccagatcatg
tccgaagacgattacgctgccaaatacgaagaattcggtgacgagttctccgcttcgatg
ggtgcggaaggcattcgtgaactgctccgctcgatcgacatcaatgccgaagcggaactg
ttgcgtaacgaactgaaagattccaagtccgaagccaagatcaagaaatatgcaaaacgt
ctgaaagttctcgaagctttccagcgttccggtatcaaaccggaatggatgatcatggaa
gtgctgccggttctgcctcctgaactgcgtccactggttccactggatggcggccgtttc
gccacgtccgatctgaacgatttgtatcgtcgcgtcatcaacagaaacaaccgtttgaaa
cgtctcctggaactgcgcgctcctgaaatcattacccgtaatgaaaaacggatgttgcag
gaagcggtcgattccctgctggacaatggccgtcgtggcaaagccatgactggcgcaaac
aaacgtccgctgaagtcactggctgaaatgatcaagggtaaaggcggtcgtttccgtcag
aacctgctgggtaaacgtgtcgactattccggccgttccgttattaccgtcggtccacag
ctcaaattgcatcagtgcggtttgccgaaactgatggctctggaactgttcaaaccgttc
attttcaacaagctggaattgatggggctggctacgaccatcaaggcagccaaacgtctc
gttgaaatccaggaaccggttgtctgggatattctggaagaagtcattcgcgaacatccg
gtcatgttgaaccgtgcgccaactctgcacagactgggtattcaggcgtttgaaccggtt
ctgatcgaaggcaaggccatccagctgcatccactggtttgcgcagcgttcaacgccgac
ttcgacggtgaccagatggcggttcacgtcccattgtccatcgaagcccagctggaagcc
cgcacattgatgctggcatccaacaatatcctgttcccgtcgaatggcgaaccatcgatt
gtgccttcgcaggatatggtgctcggtttgtactatgcgacccgtgaaaaaatcaacggc
aagggcgaaggcatgatgtttaccgacatctccgaagtccagcgcgcctacgacaacaag
gaagttgaactggctacccgtattacggttcgtctgccggattatgtaaaagatcctctc
tccggtgaaatggtcaaacgcctcatgcgttatgaaaccactgtcggtcgtgcattgctg
tctgaaattctgcctgaaggcctgccgttctccgtattgaacacgccgctgaagaaaaaa
gaaatttcacgcctgatcaatacctcattcagaaaatgcggcctgcgtgcgactgtcgtt
tttgccgaccgtctgatgcaatccggtttccgtctggcaaccaaggcaggtatttccatc
tgtatcaatgacatgctggtaccgaaacagaaagtcgacctgatttcgactgccgaacag
gaagtcaaacagattgaacagcaatacgcttccggtctggttaccgctggcgaaagatat
aacaaggttgtcgatatctggggcaaaacaggtgattccgtcggcaaggccatgatggat
cagctgaaagttcaggacgtcgtcaagcgtgacggctcgaccggtacgcaggaatccttc
aactccatttacatgatggctgactctggtgctcgcggttccgctgcacagattcgccag
ctggcaggtatgcgtggcctgatggccaagccggacggttcgattatcgaaacgccgatt
accgcgaacttccgtgaaggcctgaacgttctccagtacttcatctcgactcacggtgcc
cgtaaaggtctggccgatacagcgttgaagacggcaaactcgggttacctgacccgtcgt
ctggttgacgtgacacaggatctcgtcgttatcgaagacgattgcggtacgcacgaaggc
gtggtcatgaaagcgctgatcgaaggcggtgaagtgatcgaagccttgggcgatcgcatt
ttgggtcgtgtttctgccaatgacatcatcaatccggaatcgcgcgaagtgctgttcgaa
gcgggtacgctgctggacgaagacaagatcgaggaaatcgaacgtctgggtattgacgaa
gtcaaggttcgtacgccgctgacttgcgaaacacgttatggcatgtgtgccaagtgttat
ggccgcgatctcggccggggaagtctggtcaattccggtgaagcagtcggcgttatcgct
gcacagtccatcggtgaaccgggtacccagctgacgatgcgtactttccacattggtggt
gccgcttcccgttctgctgtcgcttccagtgtcgaagcccgttccaacggtacgattcac
tttacgtcgacaatgcgttacgtcacgaacgacaagggggaccagattgtcatttcccgt
tcgggcgaaatcatcattaccgacgatgtcggccgcgaacgcgaacgtcataaagtgcct
tacggtgcaaccttgctggtcaatgacggcttgcctgtcaaggccggtaaggtattggcg
acctgggatccgatgacccgtccgattattacggaatacgcgggaacgatccgtttcgaa
aacgtcgaagaaggcgtgaccgtggcaagacaggtcgatgaagtgaccggtctctcaacg
ctggtcgttatcgatccgaaacgtcgcggtacatcgaccaaatcggcacgtccacaggtc
aagctgttaaatgacagtggtgaagaagtgaagattgccggtaccgaacatgcggtgacg
atcagcttccaggttggcgctcttctgatggttcaggatggccagaaagtatccgtcggt
gaagttctggcgcgtattccaacggaatcgcagaaaacccgtgatattaccggtggtctg
ccacgtgttgccgaactgttcgaagcccgttcaccaaaagatgccggtacgctggcagaa
gtgaccggtacggtcgctttcggtaaggaaaccaagggcaaacagcgtcttgaaattacc
gatatggacggcaatcgtcatgaattcctgatcggcaaggacaaacaggttctggtccat
gacggtcaggttgtcaataaaggcgaaatgatcgttgacggtcctgccgatcctcaggac
attctgagactgttgggtatcgaagcgctggcacgttatattgtcgatgaagttcaggat
gtttatcgtctgcagggtgtgaagatcaatgacaagcatattgaagtcatcgttcgccag
atgctgcgccgtgtgaatgtcgtcgatgctggcgataccagctatatcaccggtgaacag
gtcgaacgttccgaactgctggacgaaaacgatcgcgtgatcgccgaaggcaagagaccg
gcaacttacgaaaacgttctgctgggcattaccaaggcatccctgtctaccgattcgttc
atctcggccgcttccttccaggaaacgacccgtgttctgaccgaagcggcgatcatgggc
aagaaagacggactgcgtggtctgaaagaaaacgtcatcgtcggacgtttgattccggcc
ggtaccggtctggcaatgcatcgtgcccgcaaacagaaatcagtctgggagcaggaagaa
cgcgctgccctgcaacgtgctgaacaggaacttccacaggaagaaccgatgcaggatatt
tcagacgttgtcagtgaaaatcccgaacatgaataa
DBGET
integrated database retrieval system
