Ostrinia furnacalis (Asian corn borer): 114357855
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Entry
114357855 CDS
T07986
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ofu
Ostrinia furnacalis (Asian corn borer)
Pathway
ofu03013
Nucleocytoplasmic transport
ofu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ofu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
114357855
03015 mRNA surveillance pathway
114357855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ofu03019
]
114357855
Enzymes [BR:
ofu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
114357855
5.6.2.5 RNA 5'-3' helicase
114357855
Messenger RNA biogenesis [BR:
ofu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
114357855
mRNA cycle factors
Common to processing body (P body) and stress granule
114357855
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
ATPase
UvrD-helicase
Helicase_RecD
AAA_16
NPHP3_N
AAA_22
SRP54
nSTAND3
AAA_5
UvrD_C_2
Ribosomal_S27e
Motif
Other DBs
NCBI-GeneID:
114357855
NCBI-ProteinID:
XP_028167441
LinkDB
All DBs
Position
Unknown
AA seq
1030 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFEFTDFTLPSQSQTQASQHDHGLTTSNQ
VNGLGRSDHTSKVLNVTNAIAELQFEEEDEALYSSKELPDHACKYCGIHDPATVVMCNIC
SKWFCNGRGNTSGSHIINHLVRAKHKEAALHRDGPLGETLLECYSCGARNVFVLGFIPAK
ADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLISDRAFLSWLVKVPSEAEQMRARQVTPQ
QIGRLEELWRDNVDATFQDLEKPGVDEEPNQVLLRYEDGYQYQNIFGPLVKLEADYDKRL
KESQTQEGIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGELHKAWSGVGHV
IKVPDNYGDDVGLELKSGAGAPLDCTSNFVVDFIWKSTSFDRMQLALRKFAVDDSSVSGY
IYRRLLGHEVEEVLFRVHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTV
TSATIVYQLVRQNGGPVLVCAPSNTAVDQLTEKIHRTGLKVVRLCAKSREAMESSVSFLA
LHEQARALGSADSELRKLTRLKEEAGELSAADERRYRALRRAAERRLLDAADVVCTTCVG
AGDPRVARMRFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKIDFPW
PRPDRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKVGVRPEQIGIITPYEGQ
RSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRL
NVALTRAKYGLIVVGNPKVLSKQPLWNHLLAFYKERRVLTEGPLSNLKESAIQFAKPKKL
VNAQNPGSHFMSTSMFDAREAMVPGSVYDRARPPXDPLAYVGPERAALLHAPVPPAAFAP
HRPPPRPRRRAPRLSQEPLSQQPPLSLSQGASQPDFSQESAAPDCPSQPDGLLSQDSTYQ
GGFRARCSQY
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgatgcgtatggtccgagctcccaaacgctcacgtttctggacactgaagaa
gcggatcttattggagctgatacccagggctccgaatttgagtttactgacttcactctc
ccttctcaaagccaaacgcaggcatctcaacatgaccacggactcacaacatccaatcag
gtaaacggtcttggacgttcagatcatacatctaaagtcttgaacgtgactaatgcgata
gcagagttgcaattcgaggaagaagatgaagctttgtacagcagtaaagagttgcctgat
catgcttgcaagtactgtggcatccacgaccctgccacggtcgttatgtgcaacatatgc
agtaaatggttttgcaatggacgtgggaacacctcaggctctcacatcatcaatcacctg
gtccgggccaagcataaggaagctgccctgcaccgtgatggacccctcggagagacattg
ctggagtgctattcttgtggtgcccggaatgtatttgtccttggatttattccggccaaa
gctgactctgtggttgttttgttgtgccgccaaccatgtgctgcacagagctcattgaag
gatatgaattgggaccaagaacagtggaaacctttgatttctgatcgtgccttcctgtcc
tggctagttaaagttccatctgaggcagagcaaatgagagctcgccaggtgacccctcaa
caaatagggcgccttgaagaactatggcgtgacaacgtcgatgctacttttcaagacttg
gagaaacctggagtggatgaggaacctaaccaagttcttttgagatatgaagatggctac
caataccagaatatctttggaccattagtgaaattggaagcggactatgacaagagacta
aaggagtctcagacccaagaaggcattgaggttcgctgggatgtgggcctcaataagaag
accattgcttactttacactcgccaaaactgatagtgatatgaagctcatgcatggtgat
gagcttaggttgagatatgtcggcgagttgcacaaggcttggtcgggagtcggtcacgtg
atcaaggtgcctgataactacggcgatgacgtaggactcgagctcaagagcggcgccggc
gcaccgctggattgcacttctaactttgtcgttgactttatatggaagagcacgtcgttt
gacaggatgcaattggccctgcgcaaattcgccgtagacgattcttcggtgtcgggctac
atttaccgccgcctgctgggacacgaagtcgaggaagttttgttccgcgtccatctgccg
aagcattttagcgccccgaacttgcctgacctcaatcgctcgcaggtttacgctgtgaaa
catgccctccaacgtccgctctcattgattcaagggccccccggcaccggcaagacggtc
acgtccgccaccatcgtgtaccagctggtgcgccagaacggcgggcccgtgctcgtgtgc
gcgccctccaacaccgccgtcgaccagctcaccgagaagatccaccgcaccgggctcaag
gtggtgcgcctgtgcgccaagtcgcgcgaggccatggagtcctccgtgtccttcctggcg
ctgcacgagcaggcgcgcgcgctgggctcggccgacagcgagctgcgcaagctcacgcgc
ctcaaggaggaggccggcgagctgtcggccgccgacgagcgccgctaccgcgccctgcgc
cgcgccgccgagcgccgcctgctcgacgccgccgacgtcgtctgcaccacctgcgtcggc
gccggcgacccgcgcgtcgcccgcatgcgcttccagtccatcctcatcgacgagggcatg
cagtccaccgagcccgagtgcatggtgcccgtcgtgctcggcgcgcgccagctcatcctc
gtcggcgaccactgccagctggggcccgtcgtcatgtgcaagaaggccgccaaggccggc
ctcagccagagcctgttcgagcgcctcgtcgtgctcggcatccggcccttccgcctcgag
gtgcagtaccgcatgcacccggagctgtcgcgcttcccgtccgacttcttctacgagggc
tcgctgcagaacggcgtcagcgccgaggagcgccgcctgcacaagatcgacttcccgtgg
ccgcgccccgaccgcccgatgttcttctacgtcacgcagggccaggaggagatcgccggc
tccggcacctcctacctgaaccgcaccgaggccgccaacgtcgagaagctcaccacgcgc
ttcctcaaggtgggcgtgcgccccgagcagatcggcatcatcacgccctacgagggccag
cgctcctacctcgtgcagcacatgcagtaccagggcagcctgcacgccaagctgtaccag
gagatcgaggtggccagcgtcgacgccttccagggccgcgagaaggacatcatcatcatg
tcgtgcgtgcgctccaacgagcaccagggcatcggcttcctcagcgacccgcgccgcctc
aacgtggcgctcacgcgcgccaagtacgggctcatcgtcgtcggcaaccccaaggtgctc
agcaagcagccgctgtggaaccacctgctcgccttctacaaggagcgccgcgtgctcacc
gagggcccgctgtccaacctcaaggagtccgcgatccagttcgcgaagcccaagaagctg
gtgaacgcgcagaaccccggctcgcacttcatgtccacgtcgatgttcgacgcgcgcgag
gccatggtgccgggctcggtgtacgaccgcgcgcggccgcctgncgacccgctggcctac
gtcgggcccgagcgcgccgcgctgctgcacgcgcccgtgccgcccgccgccttcgcgccg
caccggccgccgccgcgcccgcgccgccgcgcgccgcgcctgtcgcaggagccgctgtcg
cagcagccgccgctgtcgctgtcgcagggcgcctcgcagcccgacttcagccaggagtcg
gcggcgcccgactgcccgtcgcagccggacgggctgctgtcgcaggactccacgtaccag
ggcggcttccgggcgcgctgctcgcagtactga
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