Ostrinia furnacalis (Asian corn borer): 114366680
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Entry
114366680 CDS
T07986
Name
(RefSeq) putative U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
ofu
Ostrinia furnacalis (Asian corn borer)
Pathway
ofu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ofu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
114366680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ofu03041
]
114366680
Enzymes [BR:
ofu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114366680
Spliceosome [BR:
ofu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
114366680
Complex C
U5 SnRNP specific factors
114366680
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
DEAD
Helicase_PWI
SNRNP200_wHTH
ResIII
BRR2_plug
Helicase_C
AAA_30
AAA_22
AAA_11
Motif
Other DBs
NCBI-GeneID:
114366680
NCBI-ProteinID:
XP_028179425
LinkDB
All DBs
Position
Unknown
AA seq
1465 aa
AA seq
DB search
MADAAARQLQYEYKANSNLVLQADVRLIERRGRDEATGEVLSLTGKLGGTRMGDRAQRTK
PDKAEERKAKRQKRDEASYELSKSKTARVAWADDTPGVLYRPRAQHTRHAYELLLSFMQS
ALGDQPRDILCGACDEVLVVLKNDKLKDPEKKKEIEMLLGPIPDERFALLVNLGKKITDF
NISSATEGNTEIDETYGINVQFEESSEEDDEDAYGEVREEEKEEGEGTDNEKDKESSGEE
DSDGEGKKNAIHANLSEEMSAKRRDTTLHPMDIDAYWLQRRLSRHFPDAMVSQGKSSEVL
RALAEAADERDLENRLVLLLGYDCFSVVKLLNKYRYTILYCTKLASSQSESERAAIREEM
SKQPHLQKILAQLDTGKGDDEMTGQESEVPRKRHKTDTEPEASDPQSGGQVQGSRKVLAL
EELVFAAGAHFMANKRCQLPPGSFRKQRRGYEEVHVPALKPKPFEEDETLVAIEKLPKYV
QPAFEGFKTLNRIQSRISKAALETDENLLVCAPTGAGKTNVALLCILREVGKHVNDDGTV
NVSDFKMIYVAPMRSLVQEMVGNFSKRLSAYNMKVSELTGDHQLTREQIEATQLIVCTPE
KWDIITRKGGERSFTNLVRLIIIDEVHLLHDERGPVLEALVARTLRTVEQTQEEVRLVGL
SATLPNYTDVAAFLRVRPEQGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNDIVYEK
TMEHAGRNQILVFVHSRKETGKTARAIRDMCLEKDTLGQFLREGSASMEVLRTEAEQVKN
PELRELLPYGFAIHHAGMSRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIVKGT
QVYSPEKGRWSELGALDVLQMLGRAGRPQYDTKGEGILITNYSELQYYLSLLNQQLPIES
QLVSKLPDMLNAEVVLGSVQSVRDAVTWLGYTYLYIRMLRQPALYGVTPEKLQEDPLLEL
HRADLVHTAANLLDKAGLIKYERKSGHFQPTELGRIASHYYCTYETMQCYNQLLRPTLGE
IELFRVFSLSAEFRHVAVREEEKLELHKLMERVPIPIKESIEEPSAKINVLLQAYISQLK
LEGFALMADMVYVTQSACRLLRAIFEIVLHRGWAQLVDKTLALCKMVDRRMWQSMSPLRQ
FRKMPEEVIKKLEKKNFPWEKLYELGPNEIGELVRAPKLGKMIHKHVHQFPKLELATHIQ
PITRSTLRVELTITPDFQWDDKVHGQSEAFWILVEDVDSEVILHHEYFLLKQKYCKDEHQ
VKLFVPVFEPLPPQYFLRVVSDRWIASETQLPVSFRHLILPEKNLPPTELLDLQPLPISA
LRNPEYEALYSDIFPQFNPVQTQVFNAVYNSDDNVFVGAPSGSGKSVIAELALLRLLSAN
SGGRAVYLLPKDALADVVFADWYHRFGAKFNLKVLEKLVIAELALLRLLSANSGGRAVYL
LPKDALADVVFADWYHRFGAKFNLK
NT seq
4395 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgcggctgctaggcagttgcaatacgaatacaaagccaactccaatctcgtc
cttcaagctgatgttcgtttgattgagcgtcgcggtcgtgatgaggcgacgggagaggtt
ctatccctgaccgggaagcttggcgggacccggatgggtgaccgggctcagcgtactaag
cctgataaagctgaagagagaaaggccaagcgacagaaacgtgacgaagcatcctatgag
ctgtccaagtctaaaaccgctcgcgtggcgtgggcggacgacaccccgggtgtcctatac
cgaccgcgggctcagcacacgaggcacgcttatgaactgctgctgtcgttcatgcagagc
gctcttggggaccaaccgagggatatattgtgcggggcttgcgatgaagtgttggttgtc
ctcaaaaacgacaaactaaaggatccagagaagaaaaaagaaattgagatgttgttagga
ccgattcctgatgagagatttgcacttttagtcaacttaggcaagaagataacagacttc
aacatcagctcggcgacagaagggaacacagagatcgatgagacttacggcatcaatgtc
cagttcgaagagtcttcggaggaggacgacgaagatgcttacggggaggttcgcgaggaa
gaaaaagaggagggtgagggcacagacaacgaaaaagacaaagagagctccggggaagag
gacagcgacggagaagggaagaagaatgctattcatgccaacctgtccgaagaaatgtcg
gccaaacgtcgcgacacgacactccacccgatggatatcgacgcgtactggcttcaaaga
cggctgtccaggcatttccccgacgctatggtgtctcagggcaaatcaagcgaagtcctt
cgcgcgttagccgaggcggccgacgagcgcgacctggagaacagactagtgttgctgctc
ggctacgactgcttcagcgtcgtcaagctgctcaacaagtaccgatacaccattctctac
tgcaccaagctggcctcatcccagtcagaaagcgagcgcgccgccatccgagaggagatg
tccaagcagccgcaccttcagaagatattggctcagctggacaccggcaagggagatgac
gagatgaccggccaagaatcggaagtgccccgaaaaaggcacaaaacggacaccgaaccc
gaggcctcggacccgcagtccggcggccaagtacaaggctcgcgcaaggtgctagcgttg
gaagagctggtcttcgcggcgggagcacacttcatggccaataagaggtgccagctgccg
cccgggtcattcaggaagcagaggagaggctacgaggaagtccacgtgccggccctcaag
ccgaagcccttcgaagaagacgagactttggtcgccatcgagaaacttccgaaatacgtg
cagccggcttttgaagggttcaagacgttgaataggattcagagtcgcatatccaaagca
gcgttggagacggacgagaatctcctggtttgcgctcctacaggtgccgggaagaccaac
gtggctctcctgtgtatcctgcgggaggtgggcaaacacgtgaacgacgacgggacggtc
aacgtgagcgacttcaagatgatatatgtcgcgccgatgcggtctcttgtacaggagatg
gtgggaaacttcagcaagcgtttatcagcatacaacatgaaggtatcagagctgacggga
gaccaccagctgacccgggaacagattgaagccactcagcttatcgtctgcactccggaa
aagtgggacatcatcaccaggaaaggcggcgagcgttccttcacgaatctggtgcggctg
atcatcatagacgaagtgcatctactccatgacgaaagagggccagtgttagaagccctg
gtcgccaggaccttgaggacagttgagcagactcaggaggaggtccgcctagtgggtctg
tcggcgacactgcccaactataccgacgttgccgccttcctgcgggtcaggccggaacaa
ggactgttctacttcgacaactccttcaggcctgtagccctagaacagcagtacataggt
gtgacagagaagaaagcgctgaagcgcttccaagtgatgaacgacatcgtatatgagaag
acgatggaacacgctggcaggaatcagatactggtattcgtgcactcaagaaaagaaact
ggtaagactgcgcgcgcgatccgtgatatgtgtttggagaaggacactctggggcagttt
ttgagggagggttcagcaagcatggaagtgctccgaacggaagcggagcaggtaaagaac
ccggaacttcgtgaactactgccgtacgggttcgccatccaccacgccgggatgagccga
gtggacagaacgctggttgaagacctgttcgctgacaggcatatacaggtcctagtatcc
actgccactctcgcgtggggcgtcaacctgccggcccacaccgtcatcgtcaaagggacc
caagtgtactccccggagaaaggacggtggagcgagcttggggctttggatgtacttcaa
atgctgggcagagctgggcggccgcagtacgatactaagggagagggtatcctgataaca
aactactctgaactccaatactacttgtcgctgctcaaccaacagctgccgatcgagtcg
cagctggtcagcaagctgccggacatgctgaatgccgaggtcgtgctgggctccgtgcag
agcgtgcgggacgcggtcacgtggctgggctacacatacctgtacatccgaatgctgcgt
cagcccgcactgtacggagtcactcctgagaagctgcaggaagacccgttgcttgaactg
catagggctgacttggttcatactgctgcgaatcttttggacaaagccggcctaataaaa
tacgaacgcaaatccggccacttccaaccgaccgaactcggccgaatcgcatcgcactac
tactgcacatacgaaactatgcaatgctacaaccaactgctgcggccgacgctcggcgag
atcgaactgttccgagtgttctctctgtcggcggagttccggcacgtcgcggtgcgcgaa
gaggaaaagcttgagctgcataagctcatggagcgggtaccgatcccaataaaagagagc
atagaagagccttcagcgaagatcaacgtcctcttgcaagcgtacatatcccagctgaag
ctggaagggttcgcgctaatggctgacatggtgtacgtgacccagtctgcttgccgcctg
ctgagggcgatattcgagatcgtgctgcatagaggctgggcgcaattggtggacaagacg
ctggcgctatgcaaaatggtggaccgacgcatgtggcagtctatgtcaccgttgagacag
ttcaggaagatgcctgaagaagtcataaagaagctagaaaaaaagaacttcccctgggag
aaactgtacgagttaggtcccaacgaaataggagaattggtgcgcgcacctaaactcggc
aagatgatacacaagcatgtgcaccagttccctaagctggagctggccacacatatccag
cctatcaccaggtccacgcttagagtggaactgacgatcacgccggacttccagtgggac
gacaaggtccacggccaatcggaagccttctggatcctggtggaggatgtggattccgag
gtgatcctgcatcacgagtacttcctgctgaaacagaagtactgcaaggatgagcatcag
gtgaaactcttcgtgccagtcttcgagccgttgccgccacagtacttcttacgggtggtg
tcagacagatggatagcctccgaaacccagctgccagtatcgttccgacacctcatactg
cctgagaagaacctcccacctacagagctattggacctccaaccgctgcctatatcagcg
ctacggaaccctgaatacgaagcgctgtatagcgacatattcccgcagttcaaccctgtg
cagacacaggtgttcaacgcagtctacaactcggacgacaacgtattcgtcggtgcgccg
tccggctccggcaaatctgtgatcgctgagttggcactactgcggctgctatcggccaac
agcggtggtcgcgctgtgtacctgctgcctaaggacgcgttggctgacgttgtgtttgct
gactggtaccatcggttcggcgccaagttcaatctgaaggtacttgagaagttagtgatc
gctgagttggcactactgcggctgctgtcggccaacagcggtggtcgcgctgtgtacctg
ctgcctaaagacgcgttggctgacgtcgtgtttgctgactggtaccatcggttcggcgcc
aagttcaacttgaag
DBGET
integrated database retrieval system
