Otolemur garnettii (small-eared galago): 100941553
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Entry
100941553 CDS
T07855
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
oga
Otolemur garnettii (small-eared galago)
Pathway
oga03013
Nucleocytoplasmic transport
oga03015
mRNA surveillance pathway
oga03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oga00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100941553
09122 Translation
03013 Nucleocytoplasmic transport
100941553
03015 mRNA surveillance pathway
100941553
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oga03019
]
100941553
03041 Spliceosome [BR:
oga03041
]
100941553
Enzymes [BR:
oga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100941553
Messenger RNA biogenesis [BR:
oga03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100941553
Spliceosome [BR:
oga03041
]
Complex C
Other components
EJC/TREX
100941553
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
100941553
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
100941553
NCBI-ProteinID:
XP_003787565
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEEDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQSILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTQELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGHGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
FSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaatgatgtagacaatgagctcttggactatgaagaggatgaggtggagaca
gctgctgggggagatggggctgaggcccctgccaagaaggatgtcaagggctcctatgtc
tccatccacagctctggctttcgcgatttcctgctcaagccagagttgcttcgggccatt
gtggactgtggctttgagcatccatcagaagtccagcatgagtgcatccctcagtccatt
ctgggaatggatgtcctgtgccaggctaagtcaggcatggggaagacagcggtgtttgtg
ctggccacgctgcaacagctggaaccagttactgggcaggtgtctgtgctggtgatgtgt
cacactcaggagctggcttttcagataagcaaagaatatgagcgcttctctaaatacatg
cccaatgtcaaggtcgcagtattttttggtggtctctctatcaagaaggacgaagaggta
ctgaagaagaactgcccgcatattgtcgtggggactcctggccgcatcctagccctggct
cgaaataagagccttaacctcaaacacattaaacacttcattttggatgaatgtgataag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagatccgtcctgtctgccgc
aagttcatgcaagatccaatggagatcttcgtggatgatgagacgaagttgacgctgcat
ggattgcagcagtactatgtgaaactgaaggacaacgagaagaaccggaaactttttgac
cttctggatgtccttgagttcaaccaggtggtaatctttgtgaagtctgtgcagcgatgc
attgccctggcccagctcctggtggagcagaactttccagccattgccatccaccgtggg
atgccccaggaggagaggctttctcggtatcagcagtttaaagattttcaacgacgaatt
cttgtggctaccaacctttttggccacggcatggacattgaacgggtgaacattgccttt
aactacgacatgcctgaggattctgacacctatctccatcgggtggcccgagcaggccgg
tttggcaccaagggcttggccatcacgtttgtgtcagatgagaatgatgccaagatcctt
aatgatgtgcaggatcgttttgaagtcaatattagtgagctgcccgatgagatagacatc
ttctcctacattgaacagacacggtag
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