Otolemur garnettii (small-eared galago): 100942342
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Entry
100942342 CDS
T07855
Symbol
PCDH1
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
oga
Otolemur garnettii (small-eared galago)
Pathway
oga03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
oga00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
100942342 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
oga01009
]
100942342 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
oga04515
]
100942342 (PCDH1)
Protein phosphatases and associated proteins [BR:
oga01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
100942342 (PCDH1)
Cell adhesion molecules [BR:
oga04515
]
Cadherins
Protocadherins
100942342 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
100942342
NCBI-ProteinID:
XP_003782145
LinkDB
All DBs
Position
Unknown
AA seq
1237 aa
AA seq
DB search
MDNRAGSRRCPKAALLILGPARMGPLRPSPGPGGQHLLLPPLLLALLLLLAPSPSHATRV
VYKVPEEQPPNTLIGSLAADYGFPDVGHLYKLEVGAPYLRVDGKTGDIFTTETSIDREGL
RECQNQLPGEPCILEFEVSITDLVQNGSPRLLEGQIEVQDINDNTPNFASPVITLAIPEN
TNIGSLFPIPLASDRDAGPNGVASYELQAGPEAQELFGLQVAEDQEEKQPQLIVMGNLDR
ERWDSYDLTIKVQDGGSPPRASSALLRVTVLDTNDNAPKFERPSYEAELSENSPIGHSVI
QVKANDSDQGANAEIDYTFHQAPEVVRRLLRLDRNTGLITVQGPVDREDLSTLRFSVLAK
DRGANPKSARAQVVVTVKDMNDNAPTIEIRGIGLVTHQDGMANISEDVAEETAVALVQVS
DRDEGENAAVTCVVAGDVPFQLRQASETGSDSKKKYFLQTTTPLDYEKVKDYTIEIVAVD
SGNPPLSSTNSLKVQVVDVNDNAPVFTQSITEVAFPENNKPGEVVAEVTASDADSGSNAE
LVYSLEPEPAAKGLFTISPETGEIRVKTSLDREQRDSYELKVVAADRGSPSLQGTATVLV
NVLDCNDNDPKFMLSGYNFSVMENMPALSPVGMVTVIDGDKGENARVQLSVEQDNGDFVI
QNGTGTILSSLSFDREQQSTYTFQLKAVDGGIPPRSAYVGVTINVLDENDNAPFITAPSN
TSHRLLTPQTRLGETVSQVTAEDIDSGVNAELTYSIAGGNPYGLFQIGSHSGAITLEKEI
ERRHHGLHRLVVKVSDRGKPPRYGTALVHLYVNETLANRTLLETLLGHSLDTPLDIDIAG
DPEYERSKQRGNILFGVVAGVVAVALLIALAVLVRYCRQREAKSGYQAGKKETKDLYAPK
PSGKASKGNKSKGKKSKSPKPVKPVEDEDEAGLQKSLKFNLMSDAPGDSPRIHLPLNYPP
GSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQVVQDLPPANTFVGTGDTTSTGSEQYSDY
SYRTNPPKYPSKQLPHRRVTFSATSQAQELQDPSQHSYYDSGLEESETPSSKSSSGPRLG
PLALPEDHYERTTPDGSIGEMEHPENDLRPLPDVAMTGTCTRECSEFGHSDTCWMPGQSS
PSRRTKNSALKLSTFVPYQDRGGQEPAGAGSPSPPEDRNTKTAPVRLLPSYSAFSHSSHD
SCKDSATLEEIPLTQTSDFPPAATPASAQTAKREIYL
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atggacaaccgggccggcagccggcgctgccccaaagcggccctcctgattctggggcct
gccaggatggggcccctgaggcccagcccaggtcctgggggacagcatttgctgctgccc
cccttgctgctggcactgctgctcctgctggctccatccccaagccacgccacacgggtt
gtgtacaaggtgccagaagaacagccacccaacaccctcattgggagccttgcggctgac
tatggttttccagatgtgggccacctgtacaaactagaggtaggtgccccataccttcga
gtggatggcaagacaggtgacattttcaccactgagacctctatcgaccgtgaaggcctc
cgtgaatgccagaaccagctccctggtgagccctgcattctggagttcgaggtgtctatc
acagacctagtgcagaatggcagtccccggctgctagagggccagatagaagtacaggac
atcaacgacaacacgcccaacttcgcctcaccagtcatcactctggccatccctgagaac
accaacatcggctcactcttccccatcccattggcttcagaccgtgatgctggccccaac
ggtgtggcatcctatgagctgcaggctgggcctgaggcccaggagctatttgggctgcag
gtggcagaggaccaggaggaaaagcagccacagctcattgtgatgggcaacctggaccgt
gagcgctgggattcctatgatctcaccatcaaggtacaggatggtggcagccccccacgt
gccagcagtgccctgctacgtgtcaccgtgctcgacaccaatgacaacgcccccaagttt
gagcgaccttcctatgaggctgaactctctgagaatagccccataggccactcagttatc
caggtgaaggccaatgactcggaccaaggtgccaatgcagagatcgactacacattccac
caggcacctgaagttgtgaggcgtcttctgcgattggacaggaacactggacttatcact
gtccagggccctgtggaccgtgaggatctaagcaccctgcgcttttcggtgcttgccaag
gaccgaggtgccaaccccaagagtgcccgtgctcaggtggttgtgactgtgaaggacatg
aatgacaatgcccccaccattgagatccgaggcatagggctggtgacccatcaagatggg
atggctaacatctcagaggatgtggcagaggagacagctgtggccttggtgcaggtgtct
gatcgagatgagggagaaaatgcagcagtcacctgtgtggtggcaggtgatgtgcccttc
cagctacgccaggccagtgagacaggcagtgacagcaagaagaagtatttcctacagacc
accaccccacttgactatgagaaggtcaaagactacaccatcgagattgtggctgtggac
tctggcaaccccccactctccagcaccaactccctcaaggtgcaggtggtggatgtcaat
gacaatgcacctgtcttcactcagagcatcactgaggtggccttcccagaaaacaacaag
cctggtgaagtagttgcggaggtcactgccagtgatgctgactctggctctaatgctgag
ctggtttactctctggagcctgagccagctgccaagggcctcttcaccatctcacctgag
actggagagattcgggtgaagacatccctggacagagaacagcgggacagctatgagttg
aaggtggtggcagctgaccggggcagccctagcctccagggcacagccactgtccttgtc
aatgtgctggactgcaatgacaatgatcctaaatttatgctgagtggctataacttctca
gtgatggagaacatgccagcactgagtccagtgggcatggtgaccgtcattgatggagac
aagggggagaatgcccgggtacagctctctgtggaacaggataatggtgactttgttatc
cagaatggcacaggcaccatcctctcaagcctgagctttgatcgagagcaacaaagcact
tacaccttccagctgaaggcagtagatggtggcatcccacctcgctcagcttacgttggt
gtcaccatcaatgtactggatgagaatgacaatgcaccttttatcactgccccctctaat
acctcccacaggctgctgaccccccagacacgtcttggtgagacagtcagccaggtgaca
gctgaggacattgactctggcgtcaatgctgaattgacctatagcatcgctggtggcaac
ccttatggactcttccagattgggtcacattcaggtgccatcaccctggagaaagagatt
gagcggcgccaccatgggttacatcgcctagtggtgaaggtcagtgaccgtggcaaaccc
ccacgctatggcacagccttggtccacctttatgttaatgaaaccctggccaaccgcaca
ctgctggagacgctactgggccacagcctggacacaccactggatattgacattgctggg
gacccggaatatgaacgctctaagcagcgtggcaacattctctttggtgtagtagctggt
gtggtagccgtggccttgctcattgccctggcagtgcttgtgcgctactgccggcagcga
gaagccaagagtggctaccaggctggtaagaaggagaccaaggacctgtacgcccccaag
cccagcggcaaagcctccaagggaaacaaaagcaagggcaagaagagcaagtccccgaaa
cctgtgaagccagtggaggatgaggatgaggccgggctacagaagtccctcaaattcaac
ttaatgagtgatgcccctggagacagtccccgaatccacttgcccctcaactacccacca
ggcagccctgacctgggccgtcactaccgctctaactccccactgccttccatccagctg
cagccccagtcaccctcggcctccaagaagcaccaggtggtacaggacctgccacctgca
aacacattcgtgggcaccggggacaccacgtccacgggctctgagcagtactctgactac
agctaccgcaccaacccccccaaatatcccagcaagcagttacctcaccgccgtgtcacc
ttctcggccaccagccaggcccaggagctgcaggacccatctcagcacagttactatgac
agtggcctggaggagtctgagacaccatccagcaagtcatcctcggggcctcgactgggt
cccctagccttgcctgaggatcactatgagcgcactacccccgacggcagcataggagaa
atggagcatcccgagaatgaccttcgccctttgcctgatgtcgccatgacaggcacatgt
acccgggagtgcagcgagtttggccactccgacacatgctggatgcctggccagtcatct
ccgagccgccggaccaagaacagcgccctcaaactctccaccttcgtgccttaccaggac
cgaggagggcaggagcctgcgggcgccggcagccccagccccccggaagaccggaacacc
aaaacggcccccgtgcgcctcctgccctcctacagtgccttctcccacagtagccatgat
tcctgcaaggactcggccaccttggaggaaatccccctgacccagacctcggacttccca
cccgcagccacaccggcatctgcccagacggccaagcgtgagatctacctgtga
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