Otolemur garnettii (small-eared galago): 100947311
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Entry
100947311 CDS
T07855
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
oga
Otolemur garnettii (small-eared galago)
Pathway
oga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100947311 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oga03019
]
100947311 (PARN)
Enzymes [BR:
oga01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
100947311 (PARN)
Messenger RNA biogenesis [BR:
oga03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
100947311 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
T6PP_C
NCBP3
Motif
Other DBs
NCBI-GeneID:
100947311
NCBI-ProteinID:
XP_003802777
Ensembl:
ENSOGAG00000014626
LinkDB
All DBs
Position
Unknown
AA seq
634 aa
AA seq
DB search
MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKPFNRFSPDVKFVCQSSSIDFLASQG
FDFNKVFHNGIPYLNQEEERQLREQYDEKRSQANGAYVSPNASKCRLTIPEDQKKFIDQV
VEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKEQYIAISKV
DEEERKRREQEKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFYYPL
PADLTDFKKMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFCSPKVESAE
GFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSFLSPPEIHVSARSKLIEPFFNKLFL
MRLMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKASNLYRLFSAFGNIQISWIDDTSAFVS
LSQPEQVQIAVNTSKYAVSYRIQTYAEYVGKKQQEKQIKRKWTEDGWKEDDRKRLNTQCV
SYALQNHYYCNNSFTATSTVGKRNLSPTLEEAGLEDRASGKISDTELEQIDSCAESLSER
RKKAKKLKRMKEELSPAGSISDSPAMLFEVPDTW
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atggagataatcaggagcaattttaagagtaatcttcacaaagtgtaccaggccatagag
gaggcagacttcttcgccatcgatggggagttttcaggaatcagtgatggaccttctgtc
agtgcattaacaaatggttttgacactcctgaagaaaggtatcagaagcttaaaaagcat
tccatggactttttgctgtttcagtttggcctttgcacttttaagtatgactacacagat
tcaaagtatataacgaagtcatttaacttctatgttttcccaaaaccctttaatagattt
tcaccagatgtcaagtttgtttgtcagagctcgagcattgactttctagcaagccaggga
tttgattttaataaagtttttcacaatggaattccatatttaaatcaggaagaagaaaga
cagttaagagagcagtatgacgaaaaacgttctcaggccaatggtgcatatgtatctcct
aacgcttcaaaatgtcgtttgacaattcctgaggaccagaagaaatttattgaccaagtg
gtagagaaaattgaagatttattacaaagtgaagaaaacaagaacttggatttagagcca
tgcactgggttccaaagaaaactaatttatcagactttgagctggaagtatcccaaaggc
attcatgttgagactttagaaactgaaaagaaggagcaatatatagctatcagcaaagta
gatgaagaagaacgcaagagaagggagcaggagaagcacgcaaaagagcaggaggaactg
aacgatgctgtgggattttctagggtcatccatgccattgctaattcggggaaacttgtt
attggacacaacatgctcttggatgtcatgcacacagtgcaccagttctactaccccctg
cctgcggacttaactgattttaaaaagatgacaacatgtgttttccccagactcttggat
actaaattaatggccagcacgcaaccttttaaggatatcattaacaacacctcccttgca
gaattggaaaagcggttaaaagagacacctttctgctctcctaaagttgaaagtgcagaa
ggttttccaagttatgacactgcttctgaacaactccatgaggcaggctatgatgcttat
atcacaggactgtgttttatctccatggcaaattacctaggttcttttcttagtcctcca
gaaattcatgtgtctgccagatcaaaactcatcgaacctttttttaacaagttgtttctt
atgaggctcatggatatcccctatctaaacttggaaggaccagacttgcagcctaaacga
gaccacgttctccacgtgacattccccaaagaatggaaagccagcaacctttaccgactt
ttcagtgcctttggtaatattcagatatcctggatcgatgacacatcagcatttgtctct
ctcagccagccggaacaagtacagattgctgtcaataccagcaaatacgcagtaagctat
cggatccagacctatgctgagtatgtggggaaaaaacagcaagagaagcaaataaagaga
aagtggacagaagatggttggaaggaggatgacaggaagcggttgaacacacagtgtgta
tcctacgcactgcagaatcactattactgcaacaatagttttacagctaccagcacagta
ggaaaaagaaatttgagtcctaccctagaagaagctggcttggaggacagagcatccggg
aagatttctgacactgagcttgagcagatagattcctgtgcagaatccctctcagaaaga
aggaaaaaggccaagaaattaaaaagaatgaaggaagagctttctccagcaggaagcatc
tcagacagccctgccatgctctttgaagttcctgacacatggtaa
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