Otolemur garnettii (small-eared galago): 100947387
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Entry
100947387 CDS
T07855
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
oga
Otolemur garnettii (small-eared galago)
Pathway
oga03015
mRNA surveillance pathway
oga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oga00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100947387 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
100947387 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oga03019
]
100947387 (PABPC4)
03041 Spliceosome [BR:
oga03041
]
100947387 (PABPC4)
Messenger RNA biogenesis [BR:
oga03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100947387 (PABPC4)
mRNA cycle factors
Stress granule specific factors
100947387 (PABPC4)
Spliceosome [BR:
oga03041
]
Complex C
Other components
Complex C specific factors
100947387 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_occluded
RRM_10
RBD_RDR6
RRM_3
POP1_C
ApbA_C
Motif
Other DBs
NCBI-GeneID:
100947387
NCBI-ProteinID:
XP_003799042
Ensembl:
ENSOGAG00000004067
LinkDB
All DBs
Position
Unknown
AA seq
662 aa
AA seq
DB search
MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEK
HEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP
PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTT
TQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAATAAPRAVAP
YKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTM
HSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAA
TS
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctgcggctagcagctaccccatggcctccctgtacgtgggcgacctgcactcg
gacgtcaccgaggccatgctgtatgaaaagttcagccctgcggggcctgtgctgtccatc
cgggtctgccgcgatatgatcacccgccgttccctgggttatgcctacgtcaacttccag
cagccagctgacgctgagcgggccttggacaccatgaactttgatgtgattaagggaaag
ccaatccgtatcatgtggtctcagagggatccctctttgagaaaatctggtgtgggaaac
gtcttcatcaagaacctggacaaatctatagataacaaggcactttatgatactttctct
gcttttggaaacattctatcctgcaaggtggtgtgtgatgagaacggctctaagggttat
gcctttgtccacttcgagacccaagaggctgccgacaaggccatcgagaagatgaacggc
atgctcctcaatgaccgcaaagtgtttgtgggcagattcaagtctcgcaaagaacgggaa
gctgagcttggggccaaagccaaggaattcaccaatgtgtacatcaagaacttcggggaa
gaggtagatgatgagagtctgaaagagctattcagccagtttggtaagaccctcagtgtc
aaggtgatgcgagatcccagtgggaaatccaaaggctttggctttgtgagttatgagaaa
cacgaggatgccaataaggctgtggaagaaatgaatggaaaagaaatcagtggtaaagtc
atatttgtaggccgtgcacagaagaaagtggaacgacaggcagagctaaaacggaaattt
gagcagctgaaacaggagagaattagtcgataccagggggtaaatctctacattaagaac
ttggatgacactattgatgatgagaaattaaggaaagagttttctccttttggatcaatc
accagtgctaaggtaatgctagaagatggaagaagcaaaggatttggctttgtctgcttt
tcatctcctgaagaggcaactaaagcagtcactgagatgaatggacgcattgtgggttcc
aagccactgtatgttgccctggcccagaggaaggaagagagaaaggctcacctgaccaac
cagtacatgcagcgggtggcaggaatgagagcgctgcctgctaacgccatcttaaatcag
ttccagcctgcagctggtggctactttgtgccagcagtcccacaggctcaaggaagacct
ccatattatacacctaaccagttagcccagatgaggcctaatccacgctggcagcaaggt
gggagacctcaaggcttccaaggaatgccaagtgctatacgccagtctgggcctcgtcca
actcttcgccatctggctccaactggtaatgctccggcctctcgtggcctccctactacc
actcagagagtcgggtctgagtgcccggaccgcttggctatggactttggtggggctggt
gccgcccagcaagggctgactgacagctgccagtctggaggcgttcccacagctgtgcag
aacttagcacctcgtgctgctgttgctgctgccaccgctgctcctcgggctgttgcacca
tacaaatatgcctccagcgtccgcagccctcatcctgcgatacagcctctgcaggcaccc
cagcctgcagtccatgtgcaggggcaggagcctctgactgcctccatgctggccgcagca
cccccccaagaacagaagcagatgttgggagaacgtttgttcccgctcatccaaacaatg
cattcaaatctggctggaaagataacgggaatgctgctggaaatcgacaactctgaactg
ctgcacatgctggagtcccctgagtctctccgctccaaggtggatgaagctgtggcagtt
ctacaggctcatcatgccaagaaagaagctgcccagaaagtgggcgctgttgctgctgct
acctcttag
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