Otolemur garnettii (small-eared galago): 100948403
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Entry
100948403 CDS
T07855
Symbol
YTHDC2
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
oga
Otolemur garnettii (small-eared galago)
Brite
KEGG Orthology (KO) [BR:
oga00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oga03041
]
100948403 (YTHDC2)
Enzymes [BR:
oga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100948403 (YTHDC2)
Spliceosome [BR:
oga03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
100948403 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
Helicase_C
R3H
DEAD
HA2_N
Ank_2
AAA_19
nSTAND3
Ank
AAA_22
ATPase
PhoH
AAA_16
AAA_7
UvrD-helicase
AAA_29
T2SSE
ABC_tran
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
100948403
NCBI-ProteinID:
XP_003788959
Ensembl:
ENSOGAG00000001618
UniProt:
H0WJ02
LinkDB
All DBs
Position
Unknown
AA seq
1436 aa
AA seq
DB search
MSRPSSVSPRPPAPGGGGGGSGGGGGGPAPCGPGGGGRAKGLKDIRIDEEVKIAVNIALE
RFRYGEQREMEFPSSLTSTERAFIHRLSQSLGLVSKSKGKGANRYLTVKKKDGSETAHAM
MTCNLTHNTKHAVRSLIQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGI
PQIPVKRGESEFDSFRQSLPVFEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDC
FKNGIPCRIFCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPKTLLTFCTNG
VLLRTLMAGDSTLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHPTLKLILSSAALDVN
LFIRYFGSCPVIYIQGRPFEVKEMFLEDILRTTGYTNKEMLKYKKEKQREEKQQTTLTEW
YSAQENTFKPESQRQRTVPNVTEEYDLLDDGGDAVFSQLTEKDVNCLEPWLIKEMDACLS
DIWLHKDVDAFAQVFHLILTENVSVDYRHSETSATALMVAAGRGFASQVEQLISMGANVH
SKASNGWMALDWAKHFGQTEIVDLLESYSASLEFGNLDESSLVQTNGSDLSAEDRELLKA
YHHSFDDEKVDLDLIMHLLYNICHSCDAGAILIFLPGYDEIVGLRDRILFDDKRFADNTH
RYQVFMLHSNMQTSDQKKVLKNPPAGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSF
DALNFVTMLKMVWISKASAIQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQ
ELCLHTKLLAPVNCPIADFLMKAPEPPPALIVRNAVQMLKTIDAMDAWEDLTELGYHLAD
LPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTF
SDHMALLRAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARG
GGDIRDVNTNSENWAVVKAALVAGMYPNLVHVDRENVVLTGPKEKKVRFHPTSVLSQPQY
KKIPPANGQAAAIQALPTDWLIYDEMTRAHRIANIRCCSAVTPVTVLVFCGPARLASNAL
QEPSSFRVDGIPNDSSDSEMEDRTTANLAALKLDEWLNFKLEPEAASLLLQLRQKWHSLF
LRRMRAPSKPWSQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLASSWR
SNNSRKSSADTEFSDESTAAERVLMKSPSPALHPPQKYKDRGILHPKRSTDDRSDQSSVK
STDSSSYPSPCASPSPPSSGKGSKSPSPRPNMPIRYFIMKSSNLRNLEISQQKGIWSTTP
SNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRMCSEIGREKSQEWGSAGLGGVFKVEWI
RKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERLPLGEKTTTD
NT seq
4311 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggccgagcagcgtctccccgcggccgccggctcccggcgggggcggcggcggg
agcggaggcggcggcggtggcccggcgccgtgcggcccggggggcggcggccgggctaag
gggctgaaagacattcgtattgacgaggaggtgaaaatcgcagtcaatatcgcgctggag
cgcttccggtacggggagcagagagaaatggagtttccatcttctttgaccagtactgaa
agagcctttattcatcgattgagtcagtctcttggtttggtctctaaaagtaaaggaaag
ggagcaaatagatacctaactgtgaagaagaaagatggatcagaaacagctcatgcaatg
atgacctgtaatttgactcataatacaaaacatgctgttaggagcctaattcaaagattt
cctgtcaccaataaagagcgtacagaacttctgcctaagacagaaagaggaaatgtgttt
gcagttgaagctgagaaccgggaaatgagcaagacaagtgggagactcaacaatggcata
cctcagattccagtgaaaagaggagaatctgaatttgattcatttaggcagtctttacca
gtgtttgagaaacaagaagaaattgttaaaataataaaggaaaataaagtagttttgatt
gtaggagaaactggatctggaaagaccacacagattcctcagttccttttagatgattgc
tttaaaaatggtatcccctgccgtatattttgtactcaaccaagacgattagcagcaatt
gctgtggctgaaagagttgctgcagagaggagggagaggatcggtcaaacaattggttat
cagattcgattagaaagcagggtttctccaaagacacttctgacattttgcactaatggg
gtattgcttcgtacattgatggcaggtgatagcaccttgtcaactgtgacacatgttatt
gtggatgaagtacatgaaagggatcgatttagtgattttttacttacaaagttaagagat
ttgttgcaaaagcacccaactttgaaactaattctttctagtgctgccttggatgtaaat
ctttttataagatattttggaagttgtccagtgatatatatacaaggaagaccatttgaa
gtaaaagaaatgtttctggaagatattttaagaactactggatatacaaacaaagaaatg
ttaaagtacaaaaaggaaaaacagcgagaagagaaacaacaaaccacacttacagaatgg
tactcagctcaagagaatactttcaagcctgaatctcagaggcagagaactgttccaaat
gtgactgaagagtatgatttattggatgatggtggtgatgctgtctttagtcagttgaca
gaaaaagatgtgaattgtttggaaccgtggttaataaaggaaatggatgcttgtctgtct
gacatatggctacataaagatgttgatgcctttgctcaggtctttcaccttattttaact
gaaaatgttagtgttgattaccgacatagtgaaaccagtgcaacagctctgatggttgct
gcaggacgaggttttgcaagtcaagtagagcagttaattagtatgggagccaacgtccat
agtaaagcatcaaatggctggatggcattagattgggctaaacacttcgggcagactgaa
attgtggatcttcttgaatcctacagtgcttcactggaatttggaaatctagatgaaagt
tctctggttcaaacaaatgggagtgacctcagtgctgaagatagagagctcctgaaagct
tatcatcatagttttgatgatgaaaaagtagacttggatttgattatgcatcttctatac
aatatctgccatagctgtgatgctggtgcaatattaattttcctacctggatatgatgaa
attgttggactgagggatcgcatcctatttgatgacaagcggtttgctgataatactcac
agatatcaagtcttcatgcttcattcaaatatgcaaacatctgatcaaaagaaggtatta
aaaaacccacctgcaggtgttcgaaaaataatcctttccaccaatattgctgaaaccagc
atcacagtcaatgatgttgtctttgttattgattctggtaaggtaaaagagaaatccttt
gatgcactgaattttgttacaatgttaaaaatggtgtggatttctaaagctagtgccata
cagcgaaaaggcagggcagggcggtgtagacctggaatttgtttccgtctattcagtaga
ctccgattccagaatatgttggaatttcaaactccagaacttttgagaatgccattacag
gaactttgtttacataccaagctgcttgccccagttaattgtcccattgctgatttcctc
atgaaagcacctgaacctccaccagctttgattgttagaaatgccgtacaaatgcttaag
actatagatgcgatggatgcatgggaagatctgactgaacttgggtatcatttggctgac
ctgccagtagaaccacatcttggtaaaatggttctctgtgctgttgttttaaagtgtctg
gaccccatccttacaattgcttgcacactagcttatcgagatccttttgtactgcctact
caggcctctcaaaaacgtgcagctatgctttgtagaaaacgttttactgcaggaaccttc
agtgaccatatggcacttctgagagcattccaggcatggcagaaagcacgaagtgatggg
tgggagcgagccttttgtgaaaagaattttctttcacaagctactatggaaataatcata
ggcatgagaacacagttgcttggtcaacttagagcatcaggttttgttagagcacgaggt
ggtggtgacattcgtgatgttaacacaaactctgagaactgggctgttgttaaagctgca
ctggtggctggcatgtatcctaatttagtccatgtggacagagagaatgtagtattgaca
gggccaaaggagaaaaaagtacgatttcatcccacttcagttctcagtcagcctcaatat
aaaaagattcctccagccaatggtcaagctgcagcaattcaggcactgcccacagactgg
ctaatttatgatgaaatgaccagagctcatagaatagctaacattagatgttgttcagca
gtgacacctgtcactgtattggtattctgtggaccagctaggttggcaagtaatgctctt
caggaaccttcatcctttagagtggatggcattcccaatgacagtagtgatagtgaaatg
gaggacagaactactgctaatttggcagccttgaaacttgatgagtggctcaatttcaaa
ctagagccagaggcagccagtttattgctacaactcagacagaagtggcatagcttattt
ttacgccgaatgagagcaccatctaaaccttggtctcaagtcgatgaagctaccataaga
gcaattatagctgttttaagcactgaagaacagtctgcaggtttacagcaaccatctggg
attggccaaaggccaaggcctatgtcttcagaagaacttcctttggcatcatcttggagg
tcaaataatagtagaaaaagctcagcagatactgaattttctgatgagtccactgctgca
gaaagagtattgatgaaatctccatctccagcattacacccacctcagaagtacaaagac
agaggaattttacatcctaaacgaagcactgatgatcgatcagatcaatcttctgtgaaa
tctacagacagtagtagttacccaagtccttgtgctagtccttctcctccatcctcagga
aagggctcaaaatctccttcaccaagaccaaacatgcctattcgatactttataatgaag
agtagcaatttgagaaaccttgaaatttctcagcagaagggtatctggtctacaacccct
agtaatgagcgaaagctcaatcgagccttttgggaaagcagcatggtttacttggtattt
tctgttcaaggatctggacatttccagggattttctaggatgtgttctgagataggaaga
gagaagagccaggaatggggctcagctggactaggaggagtatttaaggtagagtggata
cggaaggagagtcttccctttcagtttgcacaccatttactcaatccgtggaatgacaac
aagaaagtacagataagcagagatgggcaggagctagaacctcaggttggtgaacagttg
ctccagttatgggaacgccttccattgggagaaaaaaccacaactgattaa
DBGET
integrated database retrieval system
