Otolemur garnettii (small-eared galago): 100952873
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Entry
100952873 CDS
T07855
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
oga
Otolemur garnettii (small-eared galago)
Pathway
oga03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oga00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100952873 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oga03041
]
100952873 (SNRNP200)
Enzymes [BR:
oga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100952873 (SNRNP200)
Spliceosome [BR:
oga03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
100952873 (SNRNP200)
Complex C
U5 SnRNP specific factors
100952873 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Motif
Other DBs
NCBI-GeneID:
100952873
NCBI-ProteinID:
XP_003799319
Ensembl:
ENSOGAG00000006879
UniProt:
H0WV46
LinkDB
All DBs
Position
Unknown
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFTQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKT
LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY
IAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKG
GERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYED
VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM
LNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSL
SSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYIT
PMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK
QRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVI
VFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYL
HEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPI
RHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVE
SVFDIMEMEDEERNALLQLTDIQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATG
AHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgtaaccgcccgtagcctgcagtacgagtacaaggcgaattccaatcttgtg
ctccaagctgaccggtctcttattgaccgcacccgtcgggatgaacccacaggagaggta
ttgtccctggttgggaagctggagggcacccgcatgggagataaggctcaacggaccaaa
ccacagatgcaagaagaaagaagagccaagcgaagaaaacgtgatgaggaccggcatgac
atcaacaagatgaagggctatactctgctatctgagggcattgatgagatggtgggcatc
atctataaacccaaaactaaggagacccgggagacctatgaggtgttactcagcttcatc
caggctgcccttggggaccagccacgggatatcctttgtggggcagctgatgaagttctg
gctgtcctaaaaaatgaaaagctgcgggacaaggaaaggcgaaaggagattgacctgctc
ctgggtcaaacagatgataccagataccatgtgctagtcaacttgggcaaaaagatcaca
gactacggtggagacaaggaaatccaaaatatggatgacaacattgatgagacatatggt
gtgaatgtgcagttcgaatctgatgaggaggaaggtgatgaagatgtatatggggaagtt
cgagaagaggcatctgatgatgacatggaaggggatgaggctgtcgtgcgctgcaccctt
tcggctaatcttgtagcctcaggtgaactgatgagttccaagaagaaggatttgcaccct
cgggatattgatgcattttggctacagcggcagcttagtcgtttctatgatgatgccatc
gtgtcgcagaagaaggcagatgaagtgttagagattttgaagacagccagtgatgatcgg
gaatgtgagaaccagctggttctgctccttggtttcaacacctttgattttattaaagtg
ttgcggcagcacaggatgatgattttgtattgtaccttactggccagtgcacagagtgaa
gctgaaaaggaaaggatcatgggaaagatggaagccgatccagagctatccaagtttctc
taccagctccatgaaactgagaaagaggatctgatccgagaggaaaggtcccggagagag
cgagtgcgtcagtccagaatggacacagatctggaaacgatggatctggaccagggtgga
gaggcactggctccacggcaggttctggacttagaggatctggtttttacccaagggagc
catttcatggccaataaacgctgtcagcttcctgatgggtctttccgtcgccagcgtaag
ggctacgaagaggtgcacgtgcctgctctgaagcccaagccctttggctcagaagaacaa
ctacttccagtggagaagctgccaaagtatgcccaggctggatttgagggcttcaaaacg
ctgaatcgaatccagagtaaactctaccgtgctgccttggaaacagatgagaacctgctg
ctgtgtgctcctactggtgctgggaagaccaatgtggctctcatgtgtatgctccgagaa
atagggaagcacataaatatggatggcaccatcaatgtggatgacttcaagattatctac
attgctcccatgcggtccttggtgcaggagatggtgggcagttttggaaagcgcctggcc
acttacggcatcactgttgctgaactgactggagaccaccagctgtgcaaggaagagatc
agtgccactcagatcatcgtctgcacccctgagaagtgggacatcatcactcgcaagggt
ggtgagcgcacctacactcagctggtgcggctcatcattctggatgaaattcatcttctc
catgatgacagagggcctgtcttagaagctctggtagccagggcaattcgaaatattgag
atgacccaagaggatgtccgactcattggtctcagtgccaccctccccaactatgaagat
gtggctacctttctgcgtgttgaccctgccaaggggcttttctactttgacaacagcttc
cgcccagtgcctctggaacagacatacgtgggcatcacagagaaaaaagctatcaagcgt
ttccagattatgaatgaaatagtctatgagaaaatcatggaacatgctgggaaaaatcag
gtgctggtgtttgtccattcccggaaggagaccgggaagacagccagggccatccgggac
atgtgcctagagaaggacactctgggtctgttcctgagagaaggctcagcctccacagaa
gtcctgcggacagaagctgagcaatgcaagaacttggagctgaaggatcttctgccttat
ggctttgctattcatcacgcaggcatgaccagagttgaccgaacacttgtggaggatctt
tttgcagataaacatattcaggttttagtttccacagcaactctggcttggggtgtgaat
cttcctgcacatactgtcatcatcaaaggcacccaggtgtatagtccagagaaggggcgc
tggacagaactgggagccctggatattctgcagatgctgggacgtgctggacgaccccag
tatgacaccaagggtgaaggcatactcatcacatctcatggggagctgcagtactacctg
tccctcctcaatcagcaattgcctattgagagccagatggtgtccaagcttcctgacatg
ctcaatgcggaaattgtgcttgggaatgtccagaatgcaaaggatgcagtgaactggctg
ggctatgcttacctgtacattcgaatgctccgatccccaaccctctatggtatctctcat
gatgacctcaagggagatcccctgttggaccagcgccgactagatctggttcacactgct
gccttgatgctggataagaataatctggtcaaatatgacaagaagacgggtaacttccag
gtgacagaactgggccggattgccagccactactacatcaccaatgatacagtacagacc
tataaccagctactgaagcccaccctgagtgagattgagcttttcagagtcttttcgttg
tcctctgagtttaagaacatcactgtgagagaggaggagaagcttgagctgcagaagttg
ttggagagggtgcccatccctgtaaaggagagcattgaggaacctagcgcaaagatcaat
gtgcttctccaagccttcatctcacagctgaaattggagggctttgcactgatggctgac
atggtatatgttacacagtcggctggtcggctgatgcgtgcaatctttgaaattgtcctg
aaccgaggttgggcacagcttacagacaagaccttgaacctctgcaagatgatcgacaaa
cgcatgtggcagtccatgtgccctctgcgccagttccgcaaactccctgaagaagtagtg
aagaagattgaaaagaaaaatttcccctttgagcgtctgtatgacctgaatcataatgaa
ataggggagcttatccgcatgccaaagatggggaagaccatccacaaatatgtccacctg
tttcccaagttggagttgtctgtgcacctgcagcctatcacacgctccaccctgaaagtg
gagctgaccatcacgccggatttccagtgggatgaaaaggtccatggttcatcagaggca
ttctggattctggtggaggatgtggatagtgaggtgattctgcaccatgagtattttctc
ctcaaggccaagtatgctcaggatgagcacctcattacattcttcgtgccagtctttgaa
cctctgccccctcagtacttcatccgagtggtatctgatcgttggctctcttgtgagacc
cagctgcctgtctccttccggcacttgatcctaccagaaaagtacccacctccaactgaa
cttttggacctgcagcccttgcctgtgtctgctctgagaaacagtgcctttgagagtctt
taccaagataaatttcctttcttcaatcccatccagacccaagtatttaacactgtgtat
aacagtgacgacaacgtgtttgtgggggcccccacgggcagtgggaagaccatctgtgca
gagtttgccatcctgcggatgctgctgcagaattcagaggggcgctgtgtctacattact
cccatggaggcccttgcagagcaggtatacatggactggtatgagaagttccaggacagg
ctcaacaaaaaggtggtgctcttaacaggggagaccagcacggacctgaagctgctgggg
aaaggcaacattatcatcagcacccctgagaaatgggacatactttcccggcggtggaag
cagcgcaagaatgtccagaatatcaacctctttgtggtggatgaggtccaccttattggg
ggcgaaaatgggcctgtcttagaagtgatctgctcccggatgcgctacatctcctcccag
attgagcggcctatccgcattgtggcacttagctcctcactctccaatgctaaggatgtg
gcccactggctgggttgcagtgctacatccactttcaacttccaccctaacgtgcgccct
gttcccttggagctgcacatccagggcttcaacataagccatacacaaactcgtctgctc
tccatggccaagcctgtataccatgctatcaccaagcactcgcccaagaaacctgtcatt
gtctttgtcccgtctcgcaagcagacccgcctcactgccattgacatcctcaccacatgt
gcagccgacatccagcggcagaggttcttgcattgcaccgagaaggatctcatcccatac
ctggaaaagctaagtgacagcactctcaaggaaacactgttaaatggggtgggctacctg
catgaggggctgagccccatggagcgacgcttggtagaacagctctttagctcaggagct
atccaggtggtggtggcttctcggagtctctgctggggcatgaacgtggctgcccaccta
gtgatcatcatggacacccagtactacaatggcaagattcatgcctatgtggattaccct
atctacgatgtgcttcagatggtgggccatgccaaccgccccctgcaggatgacgagggg
cgctgcgttatcatgtgtcagggctccaaaaaggatttctttaagaagttcttatatgag
ccattgccagtagagtctcacttggaccactgtatgcatgaccacttcaatgctgagatt
gtcactaagaccattgagaacaagcaggatgctgtggactacctcacctggacctttctg
taccgccgtatgacgcagaaccccaattattacaacctgcaaggcatctcccatcgtcac
ttgtctgaccacttgtcagagctggtggagcagaccctgagtgacctggagcagtctaag
tgcatcagcattgaggatgagatggacgtggcacctctgaacctgggcatgattgctgcc
tactattacatcaactacaccaccattgagctcttcagcatgtccctgaatgctaagacc
aaggtgcgagggcttattgagatcatctccaatgctgcagagtatgaaaacattcccatc
cggcaccatgaagacaacctcctgcgtcagttggctcagaaggtcccccataagctgaat
aaccctaagttcaatgatccgcacgtcaagaccaacctgcttctgcaggctcacctatcc
cgcatgcagctgagtgctgagttgcagtcagatacagaggaaatccttagtaaggcaatc
cggctcattcaggcctgtgtggatgtgctctccagcaatgggtggctcagccctgctctg
gcagccatggaactggcccagatggtcacccaagccatgtggtccaaggattcatacctg
aaacagttgccacacttcacctcagaacatatcaaacgttgcacagataagggagtagag
agtgtttttgacatcatggagatggaggatgaggaacggaatgcattgcttcaactgact
gacatccagattgcagacgtggcccgcttctgtaaccgctaccctaatattgaactatct
tatgaagtggtggataaagacagcatccgcagtggtgggccagtcgtggtgctggtgcag
ctggagcgagaggaggaagtcacaggccctgttattgcacctctcttcccacagaaacgt
gaagagggctggtgggtggtgattggagatgcaaagtccaatagcctcatctccatcaag
agactcaccctgcagcagaaagccaaggtgaaactggacttcgtggccccagccactggt
gcccacaactatactctgtacttcatgagtgatgcttacatgggatgtgaccaggaatac
aaattcagtgtggatgtgaaagaagctgagacagacagtgactcagattga
DBGET
integrated database retrieval system
