Otolemur garnettii (small-eared galago): 100954040
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Entry
100954040 CDS
T07855
Symbol
PABPC1
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
oga
Otolemur garnettii (small-eared galago)
Pathway
oga03015
mRNA surveillance pathway
oga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oga00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100954040 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
100954040 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oga03019
]
100954040 (PABPC1)
03041 Spliceosome [BR:
oga03041
]
100954040 (PABPC1)
Messenger RNA biogenesis [BR:
oga03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100954040 (PABPC1)
mRNA cycle factors
Stress granule specific factors
100954040 (PABPC1)
Spliceosome [BR:
oga03041
]
Complex C
Other components
Complex C specific factors
100954040 (PABPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_RDR6
Motif
Other DBs
NCBI-GeneID:
100954040
NCBI-ProteinID:
XP_023373992
LinkDB
All DBs
Position
Unknown
AA seq
669 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSKGYGFVHFETQEAAERAIEKMNGM
LLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVK
VMTDESGKSKGFGFVSFERHEDAQXXXXXMNGKELNGKQIYVGRAQKKVERQTELKRKFE
QMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFS
SPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQ
PAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRP
PFSTMRPASSQVPRVMXXXXXXXXXXXXXXXXXXXXXXXXXXAVRTVPQYKYAAGVRNPQ
QHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKI
TGMLLEIDNSELLQLEPESQPSELQALRERLWGLREDRAGVSRRRQLSHLGRTAGAHGTD
DSVPYLRRGSQDSLTTLPKRKSTTSPSEPAVITVRIKIEIKVLGERPDATIHWESIGLHL
LSHGDNDKG
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcccccagctaccccatggcctcgctctacgtgggggacctacacccc
gacgtgaccgaggcgatgctctacgagaagttcagcccggccgggcccatcctctccatc
cgggtctgcagggacatgatcacccgccgctccttgggctacgcgtatgtgaacttccag
cagccggcggacgcggagcgtgctttggacaccatgaattttgatgttattaagggcaag
ccagttcgcatcatgtggtctcagcgtgatccatcacttcgcaaatccaagggctatgga
tttgtacactttgagacacaggaagcagctgaaagagctattgaaaaaatgaatgggatg
cttctaaatgatcgaaaagtatttgttggacgatttaagtctcgtaaagaaagagaagca
gaactcggagctagggcaaaagagttcaccaatgtttacatcaagaattttggagaagac
atggatgatgagcgccttaaggatctctttggcaagtttggacctgccttaagtgtgaaa
gtaatgactgatgaaagtggaaaatccaaaggatttggatttgtaagctttgaaaggcat
gaagatgcacagnnnnnnnnnnnnnnnatgaatggaaaagagctcaatggaaaacaaata
tatgttggtcgagctcagaaaaaagtggaacggcagacagaacttaagcgcaaatttgaa
cagatgaagcaagataggatcaccagataccagggtgttaacctttatgtgaaaaatctt
gatgatggtattgatgatgaacgtctccggaaagagttttctccatttggtacaatcact
agtgcaaaggttatgatggagggtggtcgcagcaaagggtttggttttgtatgtttctcc
tccccagaagaagccactaaagcagttacagaaatgaatggtagaattgtggccaccaag
ccattgtatgtagctttagcacagcgcaaagaagagcgccaggctcacctcactaaccag
tatatgcagagaatggcaagtgtacgagctgtgcccaatcctgtaatcaacccctaccag
ccagcacctccttcaggttacttcatggcagctatcccacagactcagaaccgtgctgca
tactatcctcctagccaaattgctcaactaagaccaagtcctcgctggactgctcagggt
gccagacctcatccattccaaaatatgcccggtgctatccgcccagccgctcctagacca
ccatttagtactatgagaccagcttcttcacaggttccacgagtcatgnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnctgctgttcgcaccgttccacagtacaaatacgctgcgggagtccgcaatcctcag
caacatcttaatgcacagccacaagttaccatgcaacagcctgctgttcatgtacaaggt
caggaacctttgactgcttccatgttggcatctgccccccctcaagagcaaaagcaaatg
ttgggtgagcggctatttcctcttattcaagccatgcaccctactcttgctggtaaaatc
actggtatgttgttggagattgataattcagaacttctccagctggagccagaatctcag
ccttcagaactgcaagcgctgcgggagcggctctggggactccgcgaggaccgcgctggt
gtgtccaggcgccggcagctttcacacttgggaaggacagccggcgcccacggcacggat
gacagcgttccctacttacgaaggggttcccaagactccctgaccacgcttccaaagcga
aagtccaccacaagtccaagtgagcctgcagtgatcacagtgagaatcaaaatagaaata
aaagtgttaggagaaagaccagatgccaccattcactgggaaagcattggacttcacttg
ctcagccatggggacaatgacaaaggctaa
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