Otolemur garnettii (small-eared galago): 100956628
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Entry
100956628 CDS
T07855
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X2
KO
K06823
collagen type XVIII alpha
Organism
oga
Otolemur garnettii (small-eared galago)
Pathway
oga04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
oga00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100956628 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oga04147
]
100956628 (COL18A1)
00535 Proteoglycans [BR:
oga00535
]
100956628 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
oga00536
]
100956628 (COL18A1)
Exosome [BR:
oga04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
100956628 (COL18A1)
Proteoglycans [BR:
oga00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
100956628 (COL18A1)
Glycosaminoglycan binding proteins [BR:
oga00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100956628 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Laminin_G_3
DUF1554
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
100956628
NCBI-ProteinID:
XP_003798144
Ensembl:
ENSOGAG00000000892
LinkDB
All DBs
Position
Unknown
AA seq
1520 aa
AA seq
DB search
MAPDPSACLSLVLLTCYLSAAQADLLGLDWLWSKATSPPATPAEPQDRQPVQPTTHAAPW
DGPTERGPAPTSPEPSLELLEGGWTGPPTTPATSSSDRRDENIAGVGAKILNVAQGIRNF
VQLWDDTASTQSAAAHGKTPAAKTSTSPEPSSTPREDRTTLQTSSGTPSSPGAHTTRAAT
LLAPTQSTPLWGWPQALLRGPSVSPLSPERAVTEVGLLQLLGDPPPLQVVQIEDPEVGLA
YQFGPDANSGQVALYHVSSPFFRDFSLLFHVRPATEDAGVLFAITDAAQTVVLLGVKLSK
VQDGHQYIELLYTEPGMAQTHTAASFHHPAMVGQWTRFALSVDSSSVALYVDCEEVQRMP
LARSSRGLELEPGAGLFVAQAGGADPNKFQGMIAELKVRGDPQVSPQHCLDEDDDDMDGA
SGDFGSGREENRELPREDTGAALEPSLPRPPPVTSPPLAGGGSVEDSRTKETEEESTTAS
SGVQILPGSDEVSRRDGSVWSPGGSLKEGGLKGQKGEPGAPGLPGSIGPPGPPCVVGPPG
LPCPFSPQSPQGPVGPGALSPHAQPVPGPQGPPGLPGKDGAPGKDGRPGDPGEDGKAGDI
GPQGFPGAPGDMGPKGEKGDPGIGTRGPPGPQGPPGPPGPSFGHDRLTFIDMEGSGFGGD
LETLRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPPGLPGVPGRDGPPGFPGPPGP
SGPPGREGPPGKPGQKGSLGDVGAPGPKGSLGDPGPVGAPGESGLAGAPGPAGPPGLPGP
PGPPGPPGPGFMAGFDDMEGSGAPFWSTPRSSDGLQGLPGLPGLKGDPGTPGLPGAKGEV
GADGAPGFPGLPGREGSTGPQGPKGDRGSQGEKGDRGQDGVGQPGLRGPPGPPGPVVYVS
EQNGAVLSAPGPKGRPGYAGFPGPAGPKGDLGAKGEQGFPGPKGEKGEPGNIFSPDGRAM
VPAQKGAKGEPGFRGPPGPYGRPGHKGEIGFPGRPGRPGMNGLKGEKGEPGEPSVAFGMR
GMPGPPGPPGPPGPPGTPIYDNNAFVESGRPGPPGSPGYQGAPGPKGDKGEVGPPGPPGQ
FPFDLLHLEAEMKGEKGDRGDTGQKGERGEPGGGGFFGSSVPGPPGPPGPPGYPGVPGPK
GESIQGPPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPYRQTISVPGPPGPPGPPG
PPGITGASSGVRVWATHEALLDQVHEVPEGWLIFVAEREELYVRVRNGFRKVQLEAWTPL
PRGTDNEVAALQPPLVQLHDSNPHPRREHPHSTARPWRADDILASPPRLPAPQPYPGAPH
HGSYMHLRPARPTGPPAHTHQDFQPALHLVALNSPLSGAMRGIRGADFQCFQQARAAGLV
GTFRAFLSSRLQDLYSIVRRADRGVVPIVNLKDEVLFPSWEALFSGSEAPLKSGARLFSF
DGKDVLRHPAWPQKSVWHGSDPNGRRLTESYCETWRTEAPEATGQASSLLAGRLLGQKAV
SCHSTYIVLCIENSFGTASQ
NT seq
4563 nt
NT seq
+upstream
nt +downstream
nt
atggctcccgaccccagcgcctgcctgagcctggtgctgctcacctgctatctctcagcc
gcccaggccgacctgctgggtctggactggctgtggtccaaggccaccagccccccggct
accccagctgagccccaggaccgccaacctgtgcagcccaccacacatgcagccccctgg
gatggccccacagagcgagggccagcccccaccagccctgagccatccctggagctgttg
gaaggtggctggactgggcctcccaccacccctgctacttcgagctccgacaggagggac
gagaacatcgccggagttggagccaaaattctgaacgtggcccagggtatccggaacttt
gtacagctgtgggatgacacagcctccacccagagtgctgctgcccatgggaagacacca
gctgctaagacctccaccagccctgagccctccagcactccccgggaggacaggaccact
ctccagacgagcagtggtaccccgagctctccaggagcccacacgactagggctgcaacc
ctgcttgcgcccacccagtccacccccttatggggctggccccaggcactgctcaggggg
ccttcagtgtcacccctgtccccagagcgtgctgtcacggaggtggggctgctacagctc
ctcggggatcccccacccctacaagtggtgcagatcgaggaccctgaggtcgggctggcc
taccagtttgggccagatgccaacagtggccaggtggccctctaccatgtctccagtccc
ttcttccgagacttctcactgctattccacgtccggccagccacggaggatgcgggggta
ctgttcgccatcacggacgcggcgcagacagtggtcttgctgggcgtgaagctctccaag
gtgcaggatgggcaccagtatattgaactactctacacggagccgggcatggcccagacc
catacagctgccagcttccaccaccccgccatggttggccagtggacccgctttgcactc
agtgtggacagcagctctgtggcactctacgtggactgtgaggaggtccagaggatgcca
ctcgcccgatcctcgcggggcctagagctggagcctggcgccggcctctttgtagctcag
gctggaggagcagaccccaacaagttccaggggatgatcgcagagctgaaggtgcgtggg
gacccccaggtgagcccccagcactgcctggacgaggacgatgatgacatggatggggcg
tctggggactttggcagtgggcgtgaggagaaccgggagctgcccagggaagacacgggt
gcagccctagagcccagcctccccaggcctccccctgtcacttccccacccttggctgga
ggcggcagcgtggaagattccagaaccaaagaaactgaggaagaatccacaacggcttca
tcaggagttcagatcctccctggctcagatgaagtttccaggagggatgggagtgtctgg
agccctgggggatccctgaaggagggaggcctgaaggggcagaagggggagcccggtgct
ccaggcctgcctggctcaataggcccccccggccctccatgcgtggttggacctccaggc
ctcccgtgccccttcagcccccagagtccccagggacctgtgggcccaggggctctgagt
ccacatgcacagcctgtccctgggccgcagggacccccaggtctcccaggaaaggacggt
gccccaggaaaggacggccggccaggtgacccaggtgaagatggaaaagctggtgacatt
gggccacagggcttcccgggggccccaggagacatgggccccaagggtgagaagggggat
cctgggataggaacgagaggacccccaggaccccaggggccgccagggccaccaggacct
tcctttggacatgacaggctgaccttcattgacatggaaggatccggcttcggtggtgac
ctagagaccctccggggaccacgaggtttccctggaccccctggaccccctggtgtccca
ggcctacctggcgagccaggccgctttggggtgaacagctctgatgtcccaggaccccca
ggtcttcctggtgtgcctgggcgtgatgggccccctggatttcctgggcccccggggccc
tcaggtcctccaggaagagaggggccaccaggaaagcccgggcagaaaggcagccttggt
gatgtgggtgcccccggacccaagggaagcctgggagaccctggtcctgttggcgcccct
ggagagagcggcttggcaggagcccctggacctgctggaccaccaggcctccctgggccc
cctgggcctcctgggcctccaggaccaggattcatggctgggtttgatgatatggaaggc
tctggcgctcctttctggtcaacaccccgaagctccgacgggctacagggactgcctggc
ctgcccggactcaagggggatcctggaacacctgggctgcctggggccaagggagaagtc
ggagcagatggggccccagggttccctggcctccccggcagagagggctccaccgggcct
cagggaccaaaaggagacagaggaagccaaggagaaaaaggcgaccgaggtcaggatgga
gtaggacagccaggcctccgagggccacccggacccccagggcctgtggtctacgtgtca
gagcagaatggcgctgtgctgagtgcgccagggcctaagggccggcccggctacgcaggc
tttcctggacctgctgggcccaaaggtgacctgggtgccaaaggtgagcaaggcttccct
ggacccaagggagagaaaggtgagcctggcaacatcttcagccctgatggcagagccatg
gtccctgcccagaaaggagccaagggagagccaggcttccgaggaccgccgggtccctat
ggacgaccagggcacaagggagagattggctttcctggacggccgggtcggcccgggatg
aacggtttgaaaggagaaaaaggggagccaggagagcccagcgtggcgttcggcatgagg
ggaatgcctggcccccctgggcctccagggcccccaggccctcccgggactcccatctac
gacaacaatgcatttgtcgagtctggccggcctgggcctccaggatcaccagggtatcag
ggggctcctggaccaaagggtgacaagggagaagtgggcccacctggacctccagggcag
ttcccattcgaccttcttcacctagaggctgaaatgaagggggagaagggagacagaggg
gacactggacagaaaggcgagaggggcgagccggggggtggtggcttcttcggctccagt
gtgccaggcccccccggccccccaggccctccaggctacccaggggtcccgggccccaaa
ggagagagtatccagggcccgcctggcccacctggacctcagggaccccctggcattggc
tacgaggggcgccagggcccccctggcccaccaggcccaccagggcccccttcatttcct
ggcccctacaggcagacgatcagcgttcccggtccccccgggccccctggacccccggga
ccccctggaatcactggtgcttcctcaggggtgcgagtctgggccacgcacgaagccctg
ctggaccaggtgcacgaggtgcctgagggctggctcatctttgtggccgagcgggaggag
ctctatgtccgtgtccgaaatggcttcaggaaggttcaactggaggcctggacgccactc
ccaagagggacggacaatgaggtggctgccctgcagcccccactggtacagctgcacgac
agcaacccacacccccggcgggagcacccccactccacagcacggccctggcgggcagat
gacatcctggccagtcccccgcgcctgcccgccccgcagccctaccctggggctccacac
cacggctcctatatgcacctccgcccagcacgccccacaggcccacctgcccacacccac
caggacttccagccggcgctccatctggttgcactcaacagcccactgtcaggtgctatg
cgtggcatccgcggggccgacttccagtgcttccagcaggcacgagctgcggggctggtg
ggcaccttccgggccttcctgtcctcacggctgcaggacctctacagcatcgtgcgccgc
gctgaccgtggggttgtgcccattgtcaatctcaaggacgaggtactgttccccagctgg
gaggccctgttctcgggctccgaggccccactgaagtccggggcccgcctcttctccttt
gatggcaaagatgtcctaagacacccagcctggccccagaagagcgtgtggcacggttca
gaccctaatgggcgtcggctgaccgagagctactgtgagacgtggcggacagaggcccct
gaggccacaggccaggcttcctcactgttggcaggcaggctgctgggccagaaggctgtg
agctgccatagcacctacatcgtgctctgcattgagaacagctttgggactgcctcccag
tag
DBGET
integrated database retrieval system
