Otolemur garnettii (small-eared galago): 100966238
Help
Entry
100966238 CDS
T07855
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
oga
Otolemur garnettii (small-eared galago)
Pathway
oga03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oga00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100966238 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oga03019
]
100966238 (XAB2)
03041 Spliceosome [BR:
oga03041
]
100966238 (XAB2)
Messenger RNA biogenesis [BR:
oga03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
100966238 (XAB2)
Spliceosome [BR:
oga03041
]
Complex B
Other components
Prp19-related factors
100966238 (XAB2)
Complex C
100966238 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
TPR_2
TPR_8
Suf
TPR_19
TPR_15
ARM_TT21
ARM_TT21_C
TPR_MalT
TPR_1
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
100966238
NCBI-ProteinID:
XP_003803463
Ensembl:
ENSOGAG00000025016
UniProt:
H0Y2F1
LinkDB
All DBs
Position
Unknown
AA seq
855 aa
AA seq
DB search
MVVMARFSRAERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARIILEK
ATKVNFKQVDDLASVWCQCGELELRHENYDEALRLLRKATALPTRRAEYFDGSEPVQNRV
YKSLRVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAVFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQMWKDFEVRHGNEDTI
KEMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPPRTQSKILFVRSDASREELAELAQQANPEEIQLGEEEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcggttctcgcgggccgagcggccggaccttgtcttcgaggaagag
gacctcccctatgaggaggaaatcatgcggaaccagttctctgtcaaatgctggctccgc
tacatcgaattcaaacagggtgccccaaagcctaggctcaatcagctgtatgagcgggca
ctcaagctcctgccttgcagctataaactctggtaccgctacctgaaggcacgccgggca
caggtgaagcatcgctgtgtgactgaccctgcctatgaagatgtcaacaactgccacgag
agggcctttgtgttcatgcacaagatgccccgtctatggctcgattattgccagttcctg
atggaccaggggcgtgtcacgcacacccgccgcaccttcgaccgtgccctccgggcactg
cccatcacgcagcactctcgcatctggcccttgtacctgcgcttcctgcgctcacacccg
ctgcctgagacagctgtgcgaggttatcggcgcttcctcaaactaagtcctgagagtgca
gaggaatacattgagtacctcaagtcaagtgaccggctagatgaagctgcacagcgccta
gccactgtggtgaacgatgaacgctttgtgtccaaggccggcaagtccaactaccagcta
tggcatgagctatgcgacctcatttcccagaacccagataaggtacagtccctcaacgtg
gacgccatcatccgtgggggcctcacccgctttactgaccagctgggcaagctctggtgc
tccctggctgactactacatccgcagtggccactttgagaaggctcgggacgtgtatgag
gaggccatccggacagtgatgaccgtgcgggacttcacacaggtgtttgacagctatgcg
cagtttgaggagagcatgattgctgctaagatggagactgcgtcagagctggggcgcgaa
gaggaggatgatgtggatctggagctgcgcctggcccgctttgagcagctcattagccgg
cggcctcttctcctcaacagcgtcttgctgcgccagaacccgcaccatgtgcacgagtgg
cacaagcgtgtggctctgcaccagggccgccctcgggagatcatcaacacttacacggag
gctgtgcagacagtggaccccttcaaggccacaggcaagccccacacactgtgggttgca
tttgccaaattttatgaggacaatgggcagctggatgatgcccgcatcatcctagagaag
gccaccaaggtgaacttcaagcaggtggacgacttggccagcgtgtggtgccagtgtggg
gagctggaactccgccacgagaactacgatgaggccttgcggctgctgaggaaagccaca
gcactgcccactcgccgggccgagtactttgacggctcggagcctgtacagaaccgtgta
tacaagtcactgagggtgtggtcaatgctcgctgacctggaggagagccttggcaccttc
cagtccaccaaggctgtgtatgaccgcatcctggacctgcgcattgccacaccgcagatc
gtcatcaactacgccgtgttccttgaggagcacaagtacttcgaggaaagtttcaaggca
tacgagcgtggcatctcactgtttaagtggcccaatgtgtcagacatctggagcacctac
ctgaccaaattcattgcgcgctacgggggccgcaagctggagcgggcacgggaccttttc
gagcaggcactggatggctgtccccccaaatatgccaagaccctgtacctgctgtatgcg
cagctagaagaggaatggggtctggcccggcacgccatggccgtgtatgagcgggccaca
cgggctgtggaacccgcccagcagtacgacatgtttaacatctacattaagcgggcggct
gagatctatggagtcacccacactcggggcatctaccagaaggccatcgaggtgctgtca
gacgagcacgcccgtgagatgtgcctgcggtttgcagatatggagtgcaagctcggcgag
atcgaccgtgcccgggccatctacagcttctgctcccaaatctgtgacccccggacaact
ggcgcattctggcagatgtggaaagactttgaggtgcggcacggcaatgaggacaccatc
aaggagatgctgcgtatccgccgcagtgtgcaggccacgtacaacacgcaggtcaacttt
atggcctcgcagatgctcaaggtgtcaggcagcgccacaggcactgtgtctgacctggcc
cctgggcagagtggcatggatgacatgaagctgctggagcagcgggcagagcagctggcg
gctgaggctgagcgggaccagcctccacggacccagagcaagatcctgttcgtgaggagt
gacgcctcccgggaggagctggcagagctggcccagcaggccaaccctgaggagatccag
ctgggtgaggaggaggatgaggatgagatggacctggagcccaatgaggtccggctagag
cagcagagtgtgccagctgctgtgttcgggagcctgaaggaagactga
DBGET
integrated database retrieval system
