Oryza glaberrima (African rice): 127752572
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Entry
127752572 CDS
T08853
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 12
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127752572
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogl03019
]
127752572
03036 Chromosome and associated proteins [BR:
ogl03036
]
127752572
Enzymes [BR:
ogl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127752572
Messenger RNA biogenesis [BR:
ogl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
127752572
mRNA degradation factors
5'-3' decay
Decapping complex
127752572
Chromosome and associated proteins [BR:
ogl03036
]
Eukaryotic type
Gene silencing
piRNA pathway
127752572
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NA-iREase2
Sirohm_synth_M
Motif
Other DBs
NCBI-GeneID:
127752572
NCBI-ProteinID:
XP_052133943
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All DBs
Position
10:complement(18714038..18719499)
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AA seq
521 aa
AA seq
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MHHPRARYPPGYTSGGGGGGGGGGGGGRGNGGGGFGGGGGGGGGNHGYYGRGPQPQPQQQ
HYHHQAQQLHQHQQQQQHAQRNSSSQQQQWLRRDQATAAAASGEVAARTAAQLEAVDSSS
EDWKAQLNLPAPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPI
ALTGSDILARAKNGTGKTAAFCIPALEKIDPEKNAIQVVILVPTRELALQTSQVCKELGK
YLNIQVMVSTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTRKGICVLKDCSMLVMDEADK
LLAPEFQPSIEQLIHFLPANRQLLMFSATFPVTVKDFKEKYLPRPYVINLMDELTLKGIT
QYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQ
DHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKTSETYLHRVGRSGRFGH
LGLAVNLITYEDRFNLYRIEQELGTEIKTIPPQIDLAVYCQ
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgcaccaccccagggcgcgctacccgcccggctacacctccggcggcggcggcggcggc
ggaggcggaggaggaggcggccgtggtaatggcggcggcggatttggaggtggcggcggc
ggcggcggcgggaaccacggctactacggccggggtccgcagccgcagccgcagcagcag
cactaccaccaccaggcgcagcagctgcatcagcatcagcagcagcagcagcacgcgcag
aggaacagctcctcgcagcagcagcagtggctgcggcgggaccaggccacggcggcggct
gcgtccggggaggtcgcggcgaggacggcggcgcagttggaagccgtcgactcgagctct
gaagattggaaggcacaattgaatttgccagctccagatacacgttataggacagaggat
gtcactgcaacgaaaggcaacgagtttgaggattactttttgaaacgtgaactactaatg
ggaatatatgagaaaggattcgaaaggccatcacctattcaggaagaaagcattccaata
gctctgactggtagcgatattcttgcaagagctaaaaacggcactgggaagactgccgca
ttttgcattcccgcacttgaaaaaattgatccagagaaaaatgccatacaagttgttata
ttggtaccaacacgggaactagctctgcagacctcacaagtttgtaaagagcttgggaag
tatctgaatattcaagttatggttagtactggtggaaccagcttaaaggatgacattatg
cgtttgtatcaacctgttcatttacttgttgggacacctggtcggatactagatctaact
aggaagggcatctgtgtgctgaaggattgttcaatgcttgtaatggatgaggcagacaaa
ctgttagctccagagtttcagccttccatagagcaactcatccatttccttccagctaat
cgtcaactattgatgttttcagcaacctttccagtaaccgttaaggatttcaaagagaaa
tacctacctaggccttatgttattaatctcatggatgaactaacactaaagggaattaca
caatactatgcttttgtggaagaaagacagaaagttcactgtctgaatacacttttctcg
aagcttcaaataaaccagtccattatattctgtaactctgttaacagagttgagctactg
gctaagaaaatcaccgagcttggctattcatgcttctacattcatgcaaaaatgttgcaa
gaccatcgaaaccgagtgtttcatgattttcgcaatggtgcttgcagaaaccttgtgtgc
acagatctgtttacaagaggaattgacatccaagctgtgaatgttgtcattaattttgac
ttccctaagacttctgaaacatacttgcatagggttggtcgttcagggagatttggacac
cttggtttggcggtgaacttaatcacttatgaggaccgtttcaacttgtatcggattgag
caagaacttgggacagaaataaaaacgatacccccacaaatcgatctggcagtgtattgt
caatga
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