Oryza glaberrima (African rice): 127753800
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Entry
127753800 CDS
T08853
Name
(RefSeq) uncharacterized protein LOC127753800 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
127753800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ogl03032
]
127753800
03400 DNA repair and recombination proteins [BR:
ogl03400
]
127753800
DNA replication proteins [BR:
ogl03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
127753800
DNA repair and recombination proteins [BR:
ogl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
127753800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PTCB-BRCT
BRCT
BRCT_2
LIG3_BRCT
RTT107_BRCT_5
BRCT_3
TopBP1_BRCT0
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
127753800
NCBI-ProteinID:
XP_052135185
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All DBs
Position
11:4506934..4516788
Genome browser
AA seq
979 aa
AA seq
DB search
MTPSHGAAAAAASSSAGAGRRAATFAGASVFLSRSLVAPEVYDAVHDALRLNGAEVFLCA
DPARTGPLDFHVISSSSHERFADLRAKGCNLLGPQCILSCAKEHRFLPKQGYTCCLAMDG
VKILCSGFEKDEKAKIEQLVTAMGGTLQNKAYTDANFVIAKDVLAAKYKWAVNTLKKPIV
SRNWLEQCWIEHRVVPHEPYRIPPFSGLNICITKLNVDERRELAKIIVQNGGQYSANLTR
RCTHLVSNISFGDKYVVAQKWGNIHIVVPKWIDQSVARKVCLDESAYLVCENSTNINGVK
HSLKEQHNPEISSASFQPVPTTSVDDSVSTSQYVPASFDDASKICSTDIGAPSFQETKEL
HVDSHVAEDSEAEDDDLYLSNCRISLVGFEEKESSRLVMMIRNGGGSRHVMLSERLTHII
LGAPSEEEKKEVRRLAAWGVINVVKATWLEDCNKAKKEVKVSPSYVANELLAKEFSCVVM
EKTVMRETKAAKNSGGIFHIPTVNDLHDKQLGNDLSSERKSARGKHETMNSNRTATKSAI
SSQQNGVASTSEYHPKFQVNSSAINRQSSRSSNTFKGRTFCFSNSFSHDRRAQVVDWVRE
GGGIMVDDAQSTVVDFIIESHGQNSMLRDSSHSTAVSTHWIRSCLEEGCFQDVGSHPIFS
PLCCRIPFPGFEDFRFCVSQYEEKDRLLLKNLCFILGSKFTEKATKKVTHLICKFASGPK
YEAYYSRGIPTITAEWLFECVRQDRIVPFDQFQPKPPTSQDRDAGLCTVSQYPTQAAKTI
SRFDCSESHTESQLPRSSSKYNSAGNASVSEEPNDPGVSKRRRLSEFGKANDTSGNIGRT
EELQDSTPVPDVADAIEDLLVQSSKIQDVQPPGSIFAPDDSVLNQDQENTHSFGISRHWL
NMPQKLHSTPDTKVQSGNSATTSAAPPAAATAYYPFSETQTESQVVGYEEDLTGRQKIID
RVRSQSINVTPAAEMSSDT
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atgacgccgtcgcacggcgccgcggctgcggcggcgtcgtcctccgccggcgccgggcgg
agggccgcgacattcgcgggggcgagcgtgttcctgtcgcggagcctggtggcacccgag
gtgtacgacgccgtgcacgacgcgctccgcctcaacggcgccgaggtcttcctctgcgcc
gaccccgcccggacggggccgctcgacttccacgtcatctcctcctcctcccacgagagg
ttcgcggatctgagagccaaaggctgcaatttactcggaccacagtgcattctttcctgt
gcgaaggaacaccgcttcctacctaagcaaggttatacttgttgtcttgcaatggatggg
gttaagatactttgctcaggttttgaaaaagatgagaaggcaaagattgaacaattagtg
acagctatgggaggtactttacaaaacaaagcatacacggatgctaactttgtaattgca
aaggatgtattggctgccaaatacaaatgggctgtgaatactctgaagaagcctattgtc
agcaggaactggttagagcaatgttggattgaacatcgtgttgtacctcatgaaccttac
agaatccctcctttttctgggttgaatatttgcatcaccaaactgaatgtagacgaacgg
agggagttggcaaaaataatagtgcagaatggtggccagtattcagcaaatcttacacgg
cggtgcactcatttagtttcaaatatatcctttggtgacaagtatgttgtggcccaaaaa
tggggtaatatccacatagtagttcccaaatggatcgaccaatctgttgctcgaaaagtt
tgccttgatgaaagtgcataccttgtttgtgagaattccactaatattaatggtgtaaaa
cattcccttaaggagcaacacaaccctgagatcagtagtgcaagttttcaacctgttcca
acaacatctgtagatgactcagtatcaacgtcacagtatgtgcctgcttcatttgatgac
gcttcaaagatctgcagtactgatattggcgcacctagtttccaagagacaaaagaacta
catgttgatagccatgttgctgaggactcagaggcagaagatgatgacctttatttatca
aattgtagaatttctctggtgggttttgaggagaaagagtcgtcaagattagtcatgatg
atacgcaatggtggtggatcccggcatgttatgttaagtgagagactcacacatattatt
cttggtgcaccatcagaggaagaaaaaaaggaggtgagacgtctggctgcttggggtgta
atcaatgtggtaaaagcaacatggttagaagactgcaacaaagcaaaaaaggaggtgaaa
gtatccccaagttatgtggctaatgagttgctcgcgaaagagttttcatgtgtggttatg
gaaaaaactgttatgcgggaaacaaaagcagccaaaaactcaggtggaatttttcatatt
ccaaccgtcaatgacttgcatgataaacaacttggaaacgatctgtcatctgaaagaaaa
tcagcacggggcaaacatgaaaccatgaatagtaaccggacagcaacgaagtctgcaata
tcaagtcaacagaatggagtggctagtactagcgagtaccaccccaaatttcaagtaaac
tcttctgcaataaatcggcagagtagcagatcatcaaatactttcaaagggagaacattt
tgtttctcaaattcattttcccacgatcggagagctcaggttgttgactgggtcagagaa
ggtggaggcattatggtggatgatgcacaatcaacagttgtggatttcattatcgagagc
cacggacagaatagcatgctccgcgactcttctcattcaactgctgtttccactcattgg
atacgctcatgtttggaggagggctgcttccaagatgtgggaagccatcctattttctca
cctttgtgctgtcgcatcccgtttcctgggtttgaagattttcgtttctgtgtgtcacaa
tatgaagagaaagatagacttctgctgaagaacttgtgctttatcctcggaagtaaattt
acagagaaagcaacaaagaaagtgacccatcttatctgcaaatttgcaagtggtccaaag
tatgaggcttactatagtaggggaattccaaccataacagcagagtggctctttgagtgt
gtaagacaggatagaattgtcccttttgaccagtttcagccaaaaccacctacttctcag
gacagagatgctggtctatgcactgttagtcaatatcccacacaggccgcaaagacaatt
tccagatttgactgctctgagtcgcatactgaatctcaattaccaagaagcagttcaaaa
tacaactccgcaggtaatgcctctgttagtgaggaaccaaatgaccctggtgttagtaaa
aggaggcgattatccgagtttggcaaagctaatgatacatctggaaacataggaagaact
gaggaactccaggatagtacccctgttcctgatgttgcagatgcaatagaggacctactg
gttcaatcatccaagattcaggacgtacaacctcctgggagtatttttgcacccgatgat
tctgttcttaatcaagatcaggaaaatacacactcttttggcatttcaaggcactggttg
aacatgccacagaagctacacagcacccctgacacgaaagttcaaagtgggaactcagcc
accacctctgctgcccctcctgccgcagccactgcctattatcctttcagtgaaactcag
actgagtctcaggtcgttggctatgaagaagatttgactggcaggcaaaagattatcgac
agagttcgttctcagagcattaatgtcaccccggcagctgaaatgtcttccgatacttag
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