Oryza glaberrima (African rice): 127753908
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Entry
127753908 CDS
T08853
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
ogl
Oryza glaberrima (African rice)
Pathway
ogl03030
DNA replication
ogl03410
Base excision repair
ogl03420
Nucleotide excision repair
ogl03430
Mismatch repair
ogl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ogl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
127753908
03410 Base excision repair
127753908
03420 Nucleotide excision repair
127753908
03430 Mismatch repair
127753908
03440 Homologous recombination
127753908
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ogl03032
]
127753908
03400 DNA repair and recombination proteins [BR:
ogl03400
]
127753908
Enzymes [BR:
ogl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
127753908
DNA replication proteins [BR:
ogl03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
127753908
DNA repair and recombination proteins [BR:
ogl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
127753908
MMR (mismatch excision repair)
DNA polymerase delta complex
127753908
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
DNA_pol_B_2
divDNApol
Motif
Other DBs
NCBI-GeneID:
127753908
NCBI-ProteinID:
XP_052135317
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All DBs
Position
11:complement(4266177..4276522)
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AA seq
1105 aa
AA seq
DB search
MSSGGRGGKRRGAPLPGPSGAAAKRAHPGGTPQPPPPAATAAAPVAEEEDMMDEDVFLDE
TILAEDEEALLLLDRDDALASRLSRWKRPALPADLASGCSRNVAFQQLEIDYVIGESHKV
LLPNSSGPAAILRIFGVTREGHSVCCQVHGFEPYFYISCPMGMGPDDISRFHQTLEGRMK
DSNRNSNVPRFVKRIELVQKQTIMHYQPQQSQPFLKIVVALPTMVASCRGILERGITIEG
LGSKSFLTYESNILFALRFMIDCNIVGGNWIEVPAGKYMKAARIMSYCQLELDCLYSDLV
SHAAEGEHSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQIANLVTLQGEGQPFVRNVMT
LKSCSPIVGVDVMSFDTERDVLLAWRDFIREVDPDIIIGYNICKFDLPYLIERAEVLKIV
EFPILGRIRNSRVRVRDTTFSSRQYGMRESKDVAVEGRVQFDLLQAMQRDYKLSSYSLNS
VSAHFLGEQKEDVHHSIISDLQNGNSETRRRLAVYCLKDAYLPQRLLDKLMYIYNYVEMA
RVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNIKGQVSGQDTFEGATVLEARAGFY
EKPIATLDFASLYPSIMMAYNLCYCTLVPPEDARKLNLPPESVNKTPSGETFVKPDVQKG
ILPEILEELLAARKRAKADLKEAKDPFERAVLDGRQLALKISANSVYGFTGATVGQLPCL
EISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIYGDTDSVMVQFGVSTVEDAMKL
GREAADYISGTFIKPIKLEFEKIYFPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRD
NCLLVKNLVTECLHKILVDRDVPGAVQYVKNTISDLLMNRVDLSLLVITKGLTKTGEDYA
VKAAHVELAERMRKRDAATAPTVGDRVPYVIIKAAKGAKAYERSEDPIYVLDNNIPIDPQ
YYLENQISKPLLRIFEPILKNASRELLHGSHTRAVSISTPSNSGIMKFAKKQLTCLGCKA
VISGSNQTLCSHCKGREAELYCKTVGNVSELEMLFGRLWTQCQECQGSLHQDVLCTSRDC
PIFYRRRKAQKDMAEARVQLQRWDF
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atgagctcaggcggacgcggcggcaagcggcgaggggcgccgctcccggggccatccggg
gcggcggcgaagcgggcccaccccggtggcaccccgcagccgcctccgcccgccgcgacg
gcggcggcgcccgtggcggaggaggaggacatgatggacgaggacgtcttcctcgacgag
accatcctggcggaggacgaggaggcgctgctgctgctcgaccgggacgacgccctcgcc
tcacgcctctcccgctggaagcgccccgcgctccccgccgacctagcgtccggctgctcg
cgcaatgttgcttttcagcagctggagatagattatgttattggtgagagccacaaagta
ctgctccccaactcatctggtcctgcagctatactcaggatatttggcgtaactagagaa
ggtcacagtgtatgctgccaagtgcatggatttgagccatatttctacatcagttgtcca
atggggatgggccctgatgatatttcacgcttccaccaaacactagaggggaggatgaag
gattcaaataggaacagcaacgtgccaaggtttgtgaagagaatcgaacttgtgcagaag
cagacaatcatgcattaccaaccacagcaatctcagcctttcctcaagatagtggttgct
ttgccaacaatggttgctagttgtcgcggcatcctggaaaggggcataacaattgaaggc
cttggttcgaagagttttctgacatatgaaagcaacattctttttgcacttcgcttcatg
attgactgcaatattgttggtggtaattggattgaagttcctgccggaaagtatatgaag
gcagctcgtatcatgtcctattgtcagctagagttggattgcctatattcggatttggta
agccatgctgccgaaggagaacattctaagatggctccatttcgcatattaagttttgat
attgaatgtgccggtcgcaaaggtcacttcccagaaccaactcatgatcccgttattcag
atagctaacttggtcacccttcaaggagaaggacaaccttttgtacgcaatgttatgacg
cttaaatcatgttctcccattgttggagttgatgttatgtcatttgacacagagagggat
gttctacttgcttggagggatttcatacgtgaagtggaccctgatattattattggatac
aatatctgcaaatttgacttgccctatcttattgagagagctgaagttcttaagatagta
gagtttccaatacttggacgaatcagaaatagtcgtgttcgtgtccgtgacacaactttc
tcttcaaggcaatatggtatgcgtgaaagtaaagatgtagcagtggaaggaagagtacaa
tttgatcttctgcaggctatgcaacgggattacaagcttagttcttattcattaaactct
gtatctgcacatttcctcggggagcaaaaagaggatgttcatcactcaattatatctgat
cttcaaaatgggaattcagagacacgaagacggcttgcggtttattgtttgaaggatgcc
tatcttccacaacgactgctagataagttgatgtatatctacaactatgtggaaatggca
agagtcactggagttcccatttcatttcttctttcaaggggacagagcattaaggtcctc
tcacagctactcaggaaagcaaaacagaaaaaccttgttataccaaatataaagggtcaa
gtgtctggacaggatacctttgaaggtgcaactgttttggaggcaagggctggattttat
gagaaacccattgcgactttggactttgcttcgttgtatccatccatcatgatggcatat
aacctatgctactgtactttggtcccccctgaggatgcccgcaaactcaacctgcctcca
gaaagtgtcaacaaaaccccatctggtgaaacatttgtgaaaccagatgtgcaaaagggt
atacttcctgaaatccttgaagaattgttggctgctcggaaaagggcgaaagcagatttg
aaggaagcaaaggatccatttgaaagggccgttcttgatggtcgtcagcttgccctaaaa
ataagcgcaaactctgtctatggttttactggagcgactgttggtcaattaccttgttta
gaaatttcttcaagtgtgaccagctatggtcgacagatgattgaacatacaaaaaagctt
gttgaagataaattcacgacacttggaggctatgagcacaatgcagaggtcatatatgga
gatactgattctgtaatggtacagttcggtgtttctactgttgaggacgcaatgaagcta
ggaagagaagctgcagactacattagtggaacatttattaagcccatcaagcttgagttt
gagaagatctatttcccttatctactgattagcaagaagagatatgctggtttgtactgg
acaaatcctgagaaatttgacaaaatggacacgaaaggtattgaaacagtgagaagggac
aactgtttattagtaaagaacctggttactgagtgccttcataaaatactagtggacaga
gatgttcctggtgcagttcaatatgtcaagaacaccatttctgatctactaatgaaccgt
gtagacttatctcttctagttataacaaagggtttgactaaaacaggagaggattatgct
gtcaaagctgcccatgtggagcttgctgagagaatgcgaaagagggacgctgctactgct
cctactgttggtgaccgggttccttatgttataatcaaagcagcaaaaggggcaaaggca
tatgagaggtcagaagatcctatttatgttttggataataacataccaatagatccccaa
tactaccttgagaaccaaatcagcaaaccacttttgaggatctttgagccgattctgaag
aatgccagtagagagctgcttcatggaagtcacaccagggctgtttcaatctcaactcct
tcaaatagtggaataatgaaatttgcaaagaaacaattgacatgcctcggatgcaaagca
gttataagtggttccaatcaaacgctttgctctcattgcaagggaagagaagcagaatta
tactgcaaaactgtaggaaacgtttctgagctggagatgctctttgggaggctctggacg
cagtgccaggagtgccaaggctcccttcatcaggacgttctctgcacaagccgggattgt
cctattttctaccgccgaagaaaggcgcagaaggatatggctgaagctagagtacagctt
caacgttgggacttctga
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